Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABE85_RS21245 Genome accession   NZ_CP011514
Coordinates   4829952..4831469 (+) Length   505 a.a.
NCBI ID   WP_067283276.1    Uniprot ID   A0A1A9HSN5
Organism   Mitsuaria sp. 7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4824952..4836469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABE85_RS21220 (ABE85_21230) amt 4825839..4827392 (-) 1554 WP_067279309.1 ammonium transporter -
  ABE85_RS21225 (ABE85_21235) glnK 4827434..4827772 (-) 339 WP_067279313.1 P-II family nitrogen regulator -
  ABE85_RS21230 (ABE85_21240) - 4827783..4828505 (-) 723 WP_067279316.1 TorF family putative porin -
  ABE85_RS21235 (ABE85_21245) - 4828808..4829362 (+) 555 WP_067279319.1 ImmA/IrrE family metallo-endopeptidase -
  ABE85_RS21240 (ABE85_21250) - 4829396..4829929 (+) 534 WP_157522724.1 hypothetical protein -
  ABE85_RS21245 (ABE85_21255) comM 4829952..4831469 (+) 1518 WP_067283276.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABE85_RS21250 - 4831561..4832226 (-) 666 WP_067279326.1 glycine zipper 2TM domain-containing protein -
  ABE85_RS21255 (ABE85_21265) metH 4832384..4835152 (-) 2769 WP_082938821.1 methionine synthase -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 53549.52 Da        Isoelectric Point: 7.3001

>NTDB_id=146505 ABE85_RS21245 WP_067283276.1 4829952..4831469(+) (comM) [Mitsuaria sp. 7]
MSLSIIHSRALDGLSAAAVEVEVHLANGLPSFTLVGLADLEVKESRERVRAALQSSGLEFPANKRITVNLSPADLPKEGA
RFDLPIALGLLAASGQIDAEMLTNIECAGELGLSGELRPVKGALAMALALRAAKLERELVLPRGCAEEAALVQGLVVREA
AHLLDLVNALQPGSEAPLPRVQRDPPPRGETPLDLRDIKGQSGPKRALEIAAAGGLSILLVGPPGTGKSMLAQRLPTLLP
PLSESEALESAALLSANGQFRPSMWAQRAFRAPHHSASAAAMIGGGSPPRPGEITLAQHGVLFLDELPEFQRMSLEALRE
PLETGRVHISRSAHQAEFPARFQLVAAMNPCPCGHLGNPTKACRCSPDQVTRYQNRLSGPLLDRIDLTVEVPVLSPTILS
AAADGETSVTVATRVAAARDRAVRRQGCSNAMLAAGQLDGHLGMSPEGESMLHRAAARLAWSARSFHRVLRIARTVADLA
DSDTITALHVSEAIQWRRALPGRND

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=146505 ABE85_RS21245 WP_067283276.1 4829952..4831469(+) (comM) [Mitsuaria sp. 7]
ATGTCCCTTTCCATCATCCACAGCCGCGCGCTGGACGGCCTCTCGGCCGCGGCGGTCGAAGTGGAAGTGCACTTGGCCAA
CGGCCTGCCGAGCTTCACGCTGGTGGGGCTCGCGGACCTGGAGGTCAAGGAGTCCCGCGAGCGCGTGCGTGCCGCGCTGC
AGAGCAGCGGCCTGGAGTTCCCGGCGAACAAGCGCATCACTGTCAATCTGTCGCCCGCCGACCTGCCGAAGGAGGGCGCG
CGCTTCGACCTGCCGATCGCGCTCGGGCTGCTCGCGGCGAGCGGGCAGATCGACGCGGAGATGCTCACGAACATCGAATG
CGCCGGAGAACTCGGGCTCTCGGGTGAACTGCGTCCGGTCAAAGGCGCGTTGGCGATGGCGCTCGCGCTGCGCGCGGCCA
AGCTTGAGCGGGAGCTGGTCCTGCCTCGGGGTTGCGCCGAGGAAGCGGCGCTGGTGCAGGGACTCGTCGTGCGGGAGGCG
GCGCATCTGCTCGACCTCGTGAACGCGCTGCAACCGGGCAGCGAGGCACCGCTGCCGCGTGTGCAGCGCGATCCGCCGCC
GCGCGGCGAGACGCCGCTGGACCTGCGCGACATCAAGGGGCAGAGCGGACCGAAGCGCGCGCTGGAGATCGCCGCGGCAG
GCGGCCTGAGCATCCTGCTCGTCGGACCGCCGGGCACCGGCAAGTCGATGCTCGCGCAGCGGCTGCCGACGCTGCTGCCG
CCCTTGTCCGAATCGGAGGCGCTGGAGTCCGCCGCCCTGCTCAGCGCCAACGGCCAGTTCCGTCCGTCGATGTGGGCGCA
GCGCGCCTTCCGCGCGCCGCATCACAGCGCCTCGGCGGCCGCGATGATCGGTGGCGGTTCGCCGCCTCGGCCGGGCGAGA
TCACGCTCGCGCAACATGGCGTGCTCTTCCTCGATGAGCTGCCGGAATTCCAGCGCATGTCGCTCGAGGCCCTGCGTGAA
CCGCTGGAGACAGGCCGGGTGCACATTTCGCGCTCGGCGCATCAAGCCGAGTTCCCGGCGCGCTTCCAGCTGGTCGCGGC
GATGAACCCCTGCCCCTGCGGGCACCTCGGCAATCCGACCAAGGCCTGCCGATGTTCACCGGACCAGGTCACGCGTTATC
AGAACCGGCTGTCAGGCCCGCTGCTCGATCGCATCGACCTGACCGTGGAAGTGCCGGTGCTGTCCCCGACCATCCTGTCG
GCGGCCGCCGACGGCGAGACCAGTGTCACCGTCGCCACCCGCGTCGCCGCGGCACGTGACCGCGCGGTGCGGCGCCAGGG
TTGCTCCAACGCGATGCTGGCCGCCGGGCAGCTCGACGGTCATCTGGGCATGTCGCCGGAGGGCGAGTCGATGCTGCATC
GCGCGGCGGCCCGGCTGGCCTGGTCCGCTCGCAGCTTCCACCGGGTGCTGCGCATCGCGCGCACCGTCGCTGATCTGGCG
GACAGCGACACGATCACCGCGTTGCATGTCTCGGAAGCGATCCAGTGGCGCCGGGCGCTGCCGGGCCGCAACGACTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A9HSN5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

49.901

99.604

0.497
  comM Vibrio campbellii strain DS40M4

49.8

99.01

0.493
  comM Haemophilus influenzae Rd KW20

49.004

99.406

0.487
  comM Legionella pneumophila str. Paris

47.348

100

0.477
  comM Legionella pneumophila strain ERS1305867

47.348

100

0.477
  comM Glaesserella parasuis strain SC1401

48.008

99.406

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.036

99.406

0.408

Multiple sequence alignment