Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   IJ00_RS15465 Genome accession   NZ_CP011382
Coordinates   3688608..3688973 (+) Length   121 a.a.
NCBI ID   WP_035154387.1    Uniprot ID   A0A0T7BTN1
Organism   Calothrix sp. 336/3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3683608..3693973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IJ00_RS15455 (IJ00_15430) hmpF 3684691..3686439 (-) 1749 WP_035154383.1 pilus motility taxis protein HmpF -
  IJ00_RS15460 (IJ00_15435) - 3686900..3688102 (+) 1203 WP_035154385.1 response regulator -
  IJ00_RS15465 (IJ00_15440) pilH 3688608..3688973 (+) 366 WP_035154387.1 response regulator transcription factor Machinery gene
  IJ00_RS15470 (IJ00_15445) - 3688987..3689565 (+) 579 WP_035154389.1 chemotaxis protein CheW -
  IJ00_RS15475 (IJ00_15450) - 3689581..3692505 (+) 2925 WP_035154391.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13322.47 Da        Isoelectric Point: 4.8604

>NTDB_id=145330 IJ00_RS15465 WP_035154387.1 3688608..3688973(+) (pilH) [Calothrix sp. 336/3]
MSIVLIVEDSIAQREMITDLLKASGLTVTHASDGVEALQAIETAPPDLVVLDIVMPRMNGYEVCRRLKSDPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=145330 IJ00_RS15465 WP_035154387.1 3688608..3688973(+) (pilH) [Calothrix sp. 336/3]
ATGAGTATAGTTCTGATAGTGGAAGACAGTATTGCTCAGAGGGAGATGATTACAGACCTCCTGAAAGCCAGTGGCTTAAC
GGTTACCCATGCCAGTGACGGAGTAGAAGCCTTGCAAGCAATAGAAACTGCACCTCCAGACTTAGTGGTATTAGATATTG
TCATGCCCCGAATGAATGGTTATGAAGTTTGCCGTCGATTAAAATCTGACCCTAAAACTCAAAATGTTCCCGTAGTCATG
TGTTCTTCCAAAGGGGAAGAATTTGACCGCTACTGGGGTATGAAACAAGGTGCGGATGCTTATATTGCCAAGCCGTTTCA
ACCAACAGAGTTGGTGGGAACAGTCAAACAACTGTTGCGAGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T7BTN1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

76.033

100

0.76
  micA Streptococcus pneumoniae Cp1015

39.167

99.174

0.388
  vicR Streptococcus mutans UA159

39.167

99.174

0.388
  pilG Acinetobacter baumannii strain A118

41.228

94.215

0.388
  pilL-C Synechocystis sp. PCC 6803

36.975

98.347

0.364
  chpA Acinetobacter baumannii strain A118

37.607

96.694

0.364

Multiple sequence alignment