Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | TVD_RS12700 | Genome accession | NZ_CP011367 |
| Coordinates | 2733270..2734448 (-) | Length | 392 a.a. |
| NCBI ID | WP_047251748.1 | Uniprot ID | - |
| Organism | Thioalkalivibrio versutus strain D301 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2728270..2739448
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| TVD_RS12675 (TVD_12675) | pyrR | 2728317..2728838 (+) | 522 | WP_018145120.1 | bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR | - |
| TVD_RS12680 (TVD_12680) | - | 2728858..2729871 (+) | 1014 | WP_018145119.1 | aspartate carbamoyltransferase catalytic subunit | - |
| TVD_RS12685 (TVD_12685) | - | 2729868..2731160 (+) | 1293 | WP_047251745.1 | dihydroorotase | - |
| TVD_RS12690 (TVD_12690) | - | 2731157..2732065 (+) | 909 | WP_047251746.1 | dihydroorotate dehydrogenase electron transfer subunit | - |
| TVD_RS12695 (TVD_12695) | - | 2732131..2733249 (-) | 1119 | WP_047251747.1 | PilT/PilU family type 4a pilus ATPase | - |
| TVD_RS12700 (TVD_12700) | pilU | 2733270..2734448 (-) | 1179 | WP_047251748.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| TVD_RS12705 (TVD_12705) | pilT | 2734503..2735537 (-) | 1035 | WP_047251749.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| TVD_RS12710 (TVD_12710) | - | 2735679..2736395 (+) | 717 | WP_047251750.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| TVD_RS12715 (TVD_12715) | proC | 2736392..2737210 (+) | 819 | WP_047251751.1 | pyrroline-5-carboxylate reductase | - |
| TVD_RS12720 (TVD_12720) | - | 2737542..2738450 (-) | 909 | WP_047251752.1 | fructosamine kinase family protein | - |
| TVD_RS12725 (TVD_12725) | - | 2738520..2738903 (+) | 384 | WP_047251753.1 | group III truncated hemoglobin | - |
Sequence
Protein
Download Length: 392 a.a. Molecular weight: 44194.28 Da Isoelectric Point: 5.3483
>NTDB_id=145169 TVD_RS12700 WP_047251748.1 2733270..2734448(-) (pilU) [Thioalkalivibrio versutus strain D301]
MDRDKAIKYMHDLLRALVDRDGSDLFITVGMPPAAKIDGRVVRMTEQNLTPSHTQALVRSLMNDKQSAEFERHQECNFAI
GLSGVSRFRVNVFTQRGSPGMVLRTINSVIPKFEDIQMPPQLEKVTQERRGLVIFVGGTGSGKSTSLAAMIGYRNRTTAD
HIVTIEDPIEFVHEHAMSIITQREVGVDTESYEIALKNTLRQAPDVILIGEIRDRETMDYAVAFAETGHLCLSTLHANST
NQALDRIINFFPEDRREQLLMDLSLNLKAVISQRLVRHDDGEGRVPAVEILINTPLMADLMLKGSIHEMKELMARSREQG
MQTFDQALFDLYESRKISYDEALRNADSVNDLRLRIKIKLDSQRAQDDGAPAVKDEGEGLSVDERAEDFNLR
MDRDKAIKYMHDLLRALVDRDGSDLFITVGMPPAAKIDGRVVRMTEQNLTPSHTQALVRSLMNDKQSAEFERHQECNFAI
GLSGVSRFRVNVFTQRGSPGMVLRTINSVIPKFEDIQMPPQLEKVTQERRGLVIFVGGTGSGKSTSLAAMIGYRNRTTAD
HIVTIEDPIEFVHEHAMSIITQREVGVDTESYEIALKNTLRQAPDVILIGEIRDRETMDYAVAFAETGHLCLSTLHANST
NQALDRIINFFPEDRREQLLMDLSLNLKAVISQRLVRHDDGEGRVPAVEILINTPLMADLMLKGSIHEMKELMARSREQG
MQTFDQALFDLYESRKISYDEALRNADSVNDLRLRIKIKLDSQRAQDDGAPAVKDEGEGLSVDERAEDFNLR
Nucleotide
Download Length: 1179 bp
>NTDB_id=145169 TVD_RS12700 WP_047251748.1 2733270..2734448(-) (pilU) [Thioalkalivibrio versutus strain D301]
ATGGATCGTGACAAGGCGATCAAGTACATGCACGACCTGTTGCGGGCCTTGGTGGACCGCGACGGGTCGGATCTGTTCAT
CACCGTGGGCATGCCGCCAGCGGCGAAGATCGACGGTCGCGTGGTGCGAATGACCGAACAGAACCTGACGCCTTCGCATA
CCCAGGCGCTGGTCCGTTCGCTGATGAATGACAAGCAATCGGCTGAATTCGAGCGCCACCAAGAGTGCAACTTCGCGATT
GGGCTCTCCGGGGTTTCGCGCTTCCGCGTGAACGTCTTCACCCAACGCGGCAGCCCGGGCATGGTGCTGCGTACCATCAA
CTCGGTAATCCCGAAGTTCGAGGACATCCAGATGCCACCGCAGCTGGAGAAGGTCACCCAGGAGCGACGCGGGCTGGTGA
TCTTTGTCGGCGGCACGGGTTCAGGCAAGTCGACCTCGCTGGCGGCGATGATCGGCTATCGCAACCGCACCACGGCCGAC
CATATTGTCACCATCGAGGACCCCATCGAGTTCGTCCACGAGCACGCGATGAGCATCATCACCCAGCGCGAGGTGGGCGT
GGACACCGAAAGCTACGAGATCGCGTTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCCTGATCGGCGAGATTCGCG
ACCGGGAGACGATGGACTACGCGGTCGCATTCGCCGAGACCGGGCACCTGTGCCTGTCCACTTTGCACGCCAACAGCACC
AACCAGGCGCTGGACCGCATCATCAACTTCTTCCCCGAAGATCGGCGCGAACAGTTGCTGATGGACCTGTCGCTGAACCT
CAAGGCGGTGATCTCGCAGCGCCTGGTGCGCCACGACGATGGCGAGGGTCGCGTGCCGGCGGTGGAGATCCTGATCAACA
CCCCGCTGATGGCCGACCTGATGCTGAAGGGTTCGATCCACGAAATGAAGGAGCTGATGGCCCGTTCCCGTGAGCAGGGT
ATGCAGACCTTCGATCAGGCCCTGTTCGATCTCTACGAGAGTCGCAAGATCAGCTACGACGAGGCCCTGCGCAACGCCGA
CTCGGTCAATGACCTGCGGCTGCGCATCAAGATCAAGCTCGACAGCCAGCGCGCCCAGGACGACGGAGCCCCGGCCGTGA
AGGATGAGGGCGAGGGCCTGTCCGTGGACGAGCGCGCCGAGGACTTCAACCTGCGCTAA
ATGGATCGTGACAAGGCGATCAAGTACATGCACGACCTGTTGCGGGCCTTGGTGGACCGCGACGGGTCGGATCTGTTCAT
CACCGTGGGCATGCCGCCAGCGGCGAAGATCGACGGTCGCGTGGTGCGAATGACCGAACAGAACCTGACGCCTTCGCATA
CCCAGGCGCTGGTCCGTTCGCTGATGAATGACAAGCAATCGGCTGAATTCGAGCGCCACCAAGAGTGCAACTTCGCGATT
GGGCTCTCCGGGGTTTCGCGCTTCCGCGTGAACGTCTTCACCCAACGCGGCAGCCCGGGCATGGTGCTGCGTACCATCAA
CTCGGTAATCCCGAAGTTCGAGGACATCCAGATGCCACCGCAGCTGGAGAAGGTCACCCAGGAGCGACGCGGGCTGGTGA
TCTTTGTCGGCGGCACGGGTTCAGGCAAGTCGACCTCGCTGGCGGCGATGATCGGCTATCGCAACCGCACCACGGCCGAC
CATATTGTCACCATCGAGGACCCCATCGAGTTCGTCCACGAGCACGCGATGAGCATCATCACCCAGCGCGAGGTGGGCGT
GGACACCGAAAGCTACGAGATCGCGTTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCCTGATCGGCGAGATTCGCG
ACCGGGAGACGATGGACTACGCGGTCGCATTCGCCGAGACCGGGCACCTGTGCCTGTCCACTTTGCACGCCAACAGCACC
AACCAGGCGCTGGACCGCATCATCAACTTCTTCCCCGAAGATCGGCGCGAACAGTTGCTGATGGACCTGTCGCTGAACCT
CAAGGCGGTGATCTCGCAGCGCCTGGTGCGCCACGACGATGGCGAGGGTCGCGTGCCGGCGGTGGAGATCCTGATCAACA
CCCCGCTGATGGCCGACCTGATGCTGAAGGGTTCGATCCACGAAATGAAGGAGCTGATGGCCCGTTCCCGTGAGCAGGGT
ATGCAGACCTTCGATCAGGCCCTGTTCGATCTCTACGAGAGTCGCAAGATCAGCTACGACGAGGCCCTGCGCAACGCCGA
CTCGGTCAATGACCTGCGGCTGCGCATCAAGATCAAGCTCGACAGCCAGCGCGCCCAGGACGACGGAGCCCCGGCCGTGA
AGGATGAGGGCGAGGGCCTGTCCGTGGACGAGCGCGCCGAGGACTTCAACCTGCGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
60.983 |
88.265 |
0.538 |
| pilU | Acinetobacter baylyi ADP1 |
56.944 |
91.837 |
0.523 |
| pilU | Vibrio cholerae strain A1552 |
53.005 |
93.367 |
0.495 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
43.881 |
85.459 |
0.375 |
| pilT | Pseudomonas stutzeri DSM 10701 |
42.687 |
85.459 |
0.365 |