Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AAT16_RS00120 Genome accession   NZ_CP011366
Coordinates   24304..24813 (-) Length   169 a.a.
NCBI ID   WP_046788962.1    Uniprot ID   A0A0F7HHS8
Organism   Salinicoccus halodurans strain H3B36 isolate soil     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 19304..29813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAT16_RS00095 (AAT16_00100) - 19570..20148 (-) 579 WP_234960492.1 YfbU family protein -
  AAT16_RS00100 (AAT16_00105) - 20564..21664 (+) 1101 WP_046788959.1 general stress protein -
  AAT16_RS00105 (AAT16_00110) - 21709..22089 (-) 381 WP_046788960.1 VOC family protein -
  AAT16_RS00110 (AAT16_00115) pruA 22335..23879 (+) 1545 WP_046788961.1 L-glutamate gamma-semialdehyde dehydrogenase -
  AAT16_RS00115 (AAT16_00120) rpsR 23994..24233 (-) 240 WP_017547433.1 30S ribosomal protein S18 -
  AAT16_RS00120 (AAT16_00125) ssbA 24304..24813 (-) 510 WP_046788962.1 single-stranded DNA-binding protein Machinery gene
  AAT16_RS00125 (AAT16_00130) rpsF 24839..25138 (-) 300 WP_046788963.1 30S ribosomal protein S6 -
  AAT16_RS00130 (AAT16_00135) ychF 25451..26551 (-) 1101 WP_046788964.1 redox-regulated ATPase YchF -
  AAT16_RS00135 (AAT16_00140) - 26579..26758 (-) 180 WP_046788965.1 DUF951 domain-containing protein -
  AAT16_RS00140 (AAT16_00145) - 26774..27697 (-) 924 WP_052749790.1 mechanosensitive ion channel family protein -
  AAT16_RS00145 (AAT16_00150) - 27713..28534 (-) 822 WP_046788966.1 ParB/RepB/Spo0J family partition protein -
  AAT16_RS00150 (AAT16_00155) - 28672..29484 (-) 813 WP_046788967.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18596.29 Da        Isoelectric Point: 4.7317

>NTDB_id=145125 AAT16_RS00120 WP_046788962.1 24304..24813(-) (ssbA) [Salinicoccus halodurans strain H3B36 isolate soil]
MLNRVVLVGRLTKDPDLKVSQNNISVATFTLAVNRPFTSSNGERGADFINCVVFRKQAENVNQYLKKGSLAGVDGRLQSR
TYDNKDGQRVFVTEVVCDSVQFLEPKGQGGNQQQQYNNNSADSYTNAYGNQSTGSRPAPQQQSRQDNAEENPFANADGPV
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=145125 AAT16_RS00120 WP_046788962.1 24304..24813(-) (ssbA) [Salinicoccus halodurans strain H3B36 isolate soil]
ATGCTGAACCGTGTTGTATTGGTTGGTCGTCTTACAAAAGACCCCGATCTTAAAGTCAGTCAAAACAACATTTCCGTAGC
AACTTTTACTTTAGCGGTAAACCGCCCATTCACAAGTTCGAATGGCGAACGCGGTGCCGATTTCATAAACTGTGTTGTTT
TCCGTAAACAAGCAGAGAATGTCAATCAGTACTTGAAAAAAGGAAGCCTTGCGGGTGTTGATGGTAGACTGCAAAGCCGT
ACTTATGATAATAAGGATGGGCAGCGAGTGTTTGTGACTGAAGTAGTGTGTGACAGTGTACAATTCCTCGAGCCGAAAGG
GCAAGGCGGTAATCAACAACAGCAGTACAATAATAATTCCGCAGACAGCTATACGAATGCGTATGGTAACCAGTCTACAG
GATCAAGACCGGCTCCGCAGCAGCAGTCCAGACAGGACAATGCTGAGGAAAACCCATTTGCGAATGCAGATGGCCCGGTT
GACATCAGTGATGACGATCTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F7HHS8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.586
  ssb Latilactobacillus sakei subsp. sakei 23K

51.136

100

0.533
  ssb Neisseria meningitidis MC58

35.519

100

0.385
  ssb Neisseria gonorrhoeae MS11

35.519

100

0.385
  ssb Glaesserella parasuis strain SC1401

33.333

100

0.367

Multiple sequence alignment