Detailed information NTG0143628

Bioinformatically predicted

Overview

• Name: vicR
• Type: Regulator
• Locus tag: SMQ301_RS05515
• Genome accession: NZ_CP011217
• Coordinates: 1040485..1041192 (-)
• Length: 235 a.a.
• NCBI ID: WP_011681206.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain SMQ-301
• Function: repress comCDE expression; repress comX expression (predicted from homology) Competence regulation

Genomic Context

Location: 1035485..1046192

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SMQ301_RS05490 (SMQ301_1124)	yidA	1035836..1036645 (+)	810	WP_011681201.1	sugar-phosphatase	-
SMQ301_RS05495 (SMQ301_1125)	-	1036647..1037861 (+)	1215	WP_011681202.1	aminoacyltransferase	-
SMQ301_RS10190 (SMQ301_1126)	-	1037913..1038274 (-)	362	Protein_1016	YbaN family protein	-
SMQ301_RS05505 (SMQ301_1127)	vicX	1038334..1039146 (-)	813	WP_011681204.1	MBL fold metallo-hydrolase	Regulator
SMQ301_RS05510 (SMQ301_1128)	vicK	1039152..1040492 (-)	1341	WP_011681205.1	cell wall metabolism sensor histidine kinase VicK	Regulator
SMQ301_RS05515 (SMQ301_1129)	vicR	1040485..1041192 (-)	708	WP_011681206.1	response regulator YycF	Regulator
SMQ301_RS05520 (SMQ301_1131)	-	1041716..1042483 (+)	768	WP_011681207.1	amino acid ABC transporter ATP-binding protein	-
SMQ301_RS05525 (SMQ301_1132)	-	1042495..1043328 (+)	834	WP_011681208.1	transporter substrate-binding domain-containing protein	-
SMQ301_RS05530 (SMQ301_1133)	-	1043346..1044044 (+)	699	WP_011681209.1	amino acid ABC transporter permease	-
SMQ301_RS05535 (SMQ301_1134)	-	1044056..1044706 (+)	651	WP_011226088.1	amino acid ABC transporter permease	-
SMQ301_RS05540 (SMQ301_1135)	endA	1044778..1045659 (-)	882	WP_011681210.1	DNA/RNA non-specific endonuclease	Machinery gene
SMQ301_RS05545 (SMQ301_1136)	-	1045721..1045909 (-)	189	WP_011226090.1	DNA-directed RNA polymerase subunit beta	-

Sequence

Protein

• Length: 235 a.a.
• Molecular weight: 27058.98 Da
• Isoelectric Point: 5.0130

>NTDB_id=143628 SMQ301_RS05515 WP_011681206.1 1040485..1041192(-) (vicR) [Streptococcus thermophilus strain SMQ-301]
MKKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKKPDLVILDLMLPELDGLEVAKEIRKTSHTPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTETIETAVEESSNSGKQEISIGELVIVPDAFVAKKRGNEVEL
THREFELLFHLATHMGQVMTREHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMKNYD

Nucleotide

• Length: 708 bp

>NTDB_id=143628 SMQ301_RS05515 WP_011681206.1 1040485..1041192(-) (vicR) [Streptococcus thermophilus strain SMQ-301]
ATGAAAAAAATTCTAGTTGTTGATGATGAAAGACCAATCTCCGATATCATCAAGTTTAACCTTACTAAGGAGGGTTATGA
AGTGGTTACGGCCTTTGATGGGCGAGAAGCTTTGGAACAATTTGAAGCTAAAAAACCAGACTTGGTTATTCTGGACTTGA
TGTTGCCTGAACTGGATGGTTTGGAAGTTGCCAAGGAAATCCGTAAAACGAGCCACACACCGATTATCATGCTTTCAGCT
AAAGATAGTGAGTTTGATAAGGTTATCGGATTAGAAATTGGGGCAGACGACTATGTGACTAAGCCATTTTCTAACCGTGA
ATTGTTGGCACGTATTAAAGCCCACTTGCGTCGTACAGAAACGATTGAAACCGCAGTAGAAGAGAGCTCTAACTCTGGCA
AACAAGAAATTTCAATTGGTGAGTTGGTTATTGTTCCGGATGCCTTTGTTGCTAAAAAACGTGGAAACGAAGTTGAGTTG
ACCCACCGTGAATTTGAGTTACTCTTCCACTTGGCAACTCATATGGGACAAGTTATGACGCGTGAACATTTGCTTGAAAC
CGTTTGGGGCTATGACTATTTTGGGGATGTTCGTACTGTGGACGTAACGATTCGTCGTCTGCGTGAAAAAATTGAAGATA
CACCTAGCCGTCCTGAATATATCTTGACGCGTCGTGGTGTCGGTTATTACATGAAGAATTATGACTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (4-113)

• Transcriptional regulatory protein, C terminal (Trans_reg_C) (155-230)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
vicR	Streptococcus mutans UA159	85.532	100	0.855
micA	Streptococcus pneumoniae Cp1015	80.258	99.149	0.796
covR	Lactococcus lactis subsp. lactis strain DGCC12653	46.32	98.298	0.455
covR	Streptococcus salivarius strain HSISS4	45.299	99.574	0.451
scnR	Streptococcus mutans UA159	38.559	100	0.387