Detailed information NTG0140786

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: SCVFeb_RS06935
• Genome accession: NZ_CP013477
• Coordinates: 1464138..1465142 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain SCVFeb
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1459138..1470142

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SCVFeb_RS06905 (SCVFeb_1353)	fghA	1459230..1460081 (+)	852	WP_004345459.1	S-formylglutathione hydrolase	-
SCVFeb_RS06910 (SCVFeb_1354)	ispF	1460152..1460625 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
SCVFeb_RS06915 (SCVFeb_1355)	truD	1460622..1461689 (+)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
SCVFeb_RS06920 (SCVFeb_1356)	surE	1461677..1462426 (+)	750	WP_004345454.1	5'/3'-nucleotidase SurE	-
SCVFeb_RS06925 (SCVFeb_1357)	-	1462459..1463094 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
SCVFeb_RS06930 (SCVFeb_1358)	-	1463140..1464033 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
SCVFeb_RS06935 (SCVFeb_1359)	rpoS	1464138..1465142 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
SCVFeb_RS06940 (SCVFeb_1361)	fdxA	1465568..1465891 (-)	324	WP_003092272.1	ferredoxin FdxA	-
SCVFeb_RS06945 (SCVFeb_1362)	mutS	1465958..1468525 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
SCVFeb_RS06955 (SCVFeb_1363)	-	1468651..1469658 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=140786 SCVFeb_RS06935 WP_003113871.1 1464138..1465142(+) (rpoS) [Pseudomonas aeruginosa strain SCVFeb]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=140786 SCVFeb_RS06935 WP_003113871.1 1464138..1465142(+) (rpoS) [Pseudomonas aeruginosa strain SCVFeb]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653