Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   UC34_RS02485 Genome accession   NZ_CP010897
Coordinates   554198..555808 (-) Length   536 a.a.
NCBI ID   WP_044453689.1    Uniprot ID   -
Organism   Pandoraea vervacti strain NS15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 549198..560808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UC34_RS02465 (UC34_02530) - 550455..550979 (-) 525 WP_044453687.1 TlpA disulfide reductase family protein -
  UC34_RS02470 (UC34_02535) - 551037..551744 (-) 708 WP_237165215.1 thioredoxin -
  UC34_RS02475 (UC34_02540) - 551823..552362 (+) 540 WP_052811242.1 hypothetical protein -
  UC34_RS02480 (UC34_02545) - 552652..554238 (+) 1587 WP_044453688.1 hypothetical protein -
  UC34_RS02485 (UC34_02550) comM 554198..555808 (-) 1611 WP_044453689.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  UC34_RS02490 (UC34_02555) - 556223..556471 (-) 249 WP_069340380.1 accessory factor UbiK family protein -
  UC34_RS02495 (UC34_02560) - 556868..557713 (+) 846 WP_044453691.1 TorF family putative porin -
  UC34_RS02500 (UC34_02565) - 557727..558065 (+) 339 WP_010804740.1 P-II family nitrogen regulator -
  UC34_RS02505 (UC34_02570) amt 558151..559629 (+) 1479 WP_237165302.1 ammonium transporter -

Sequence

Protein


Download         Length: 536 a.a.        Molecular weight: 57154.28 Da        Isoelectric Point: 8.4501

>NTDB_id=140709 UC34_RS02485 WP_044453689.1 554198..555808(-) (comM) [Pandoraea vervacti strain NS15]
MSLAVVSSRAITGMAARPVTVEVHLANGLPGLSLVGLPDTEVKESRERVRSALQNSRFEFPARRITINLAPADLPKASGC
FDLPIALGILAASGQLPETGLRTHEFAGELSLTGELRPIRGGLAMASAMAQSRSSRALVLPASSAQEAALVEEATVYGAR
TLLDVCAHLAEPDVATRLPRATVPRSVADDATLPGQSQQALAGPLQGLHQRTHHETRQGAHTGEIADMLDIKGQEHAKRA
LEVAAAGGHHILFHGPPGTGKSMLATRLAGLLPPLSKAQAVEAATLASLSAHGFDMQHWGRRPFRAPHHTASSAALVGGG
STPRPGEISLAHRGVLFLDELPEFQRRVLEVLREPLELGHVTISRAGGHATFPAAFQLVAAMNPCPCGDLGHPLRTCRCT
GDAVARYRNRLSGPLLDRIDLHVEVPALSAETFAAPACGERSAEVAKRVAQAQARQLSRQGQLNCTLSNRALETQCPLSP
EAKAVLHRAVTQHHWSARTYHRVLRVARTIADLAQRDAIDIPEITEAVQYREITMS

Nucleotide


Download         Length: 1611 bp        

>NTDB_id=140709 UC34_RS02485 WP_044453689.1 554198..555808(-) (comM) [Pandoraea vervacti strain NS15]
ATGTCATTGGCAGTGGTGAGCAGTCGGGCAATCACAGGAATGGCGGCACGTCCGGTCACGGTCGAAGTGCATTTGGCAAA
CGGGTTGCCGGGCCTGTCGCTGGTCGGTCTGCCGGATACGGAAGTCAAGGAGAGCCGCGAGCGCGTGCGCTCGGCGTTGC
AGAACAGCCGGTTCGAATTTCCGGCGCGACGTATCACGATCAATCTCGCGCCAGCGGATTTGCCCAAGGCGTCGGGCTGC
TTCGATCTGCCGATCGCACTGGGCATTCTGGCGGCGAGCGGCCAGTTGCCCGAGACGGGACTGCGCACGCACGAGTTTGC
CGGCGAGTTGTCGCTCACCGGCGAGCTGCGCCCGATTCGCGGCGGGTTGGCCATGGCGAGCGCGATGGCGCAAAGCCGGT
CTTCACGAGCGCTGGTGCTGCCCGCGAGCAGCGCGCAGGAAGCCGCGCTGGTGGAAGAGGCAACTGTCTATGGCGCGCGG
ACTTTGCTCGATGTCTGCGCGCATCTTGCCGAACCGGACGTCGCCACGCGACTGCCGCGCGCCACGGTGCCACGCAGCGT
GGCCGACGACGCGACGCTTCCGGGACAATCTCAGCAGGCGTTGGCGGGGCCACTTCAGGGGCTGCATCAGAGAACACATC
ACGAGACACGACAGGGAGCGCACACCGGCGAGATCGCCGACATGCTCGACATCAAAGGACAGGAACACGCCAAACGGGCG
CTGGAAGTCGCGGCGGCAGGCGGGCACCACATCCTGTTCCACGGGCCGCCCGGCACCGGCAAATCCATGCTCGCCACACG
ACTTGCCGGATTGCTGCCCCCATTGAGCAAGGCACAGGCGGTCGAGGCCGCCACGCTCGCGAGTCTCAGTGCACACGGCT
TTGACATGCAGCACTGGGGACGGCGCCCGTTTCGCGCGCCGCATCACACGGCGTCGTCGGCGGCGCTGGTGGGCGGAGGC
AGCACGCCGCGCCCCGGAGAGATCAGTCTCGCGCATCGGGGTGTGCTTTTTCTCGACGAGTTGCCCGAGTTCCAACGCAG
GGTGCTCGAGGTGTTGCGCGAGCCGCTGGAACTCGGCCACGTGACGATCTCCCGTGCCGGGGGACACGCCACGTTCCCCG
CCGCCTTCCAACTGGTCGCGGCGATGAATCCCTGCCCCTGCGGTGATCTGGGGCATCCATTGCGAACTTGCCGTTGTACC
GGCGACGCAGTGGCGAGATATCGCAACCGGCTTTCCGGCCCGTTGCTCGACCGGATCGACTTGCACGTGGAAGTGCCGGC
GCTGAGTGCGGAGACATTTGCCGCCCCCGCATGCGGCGAACGCAGCGCCGAGGTTGCGAAACGCGTGGCGCAGGCGCAGG
CGAGGCAGCTATCGCGTCAGGGGCAATTGAATTGCACGCTGTCGAACCGCGCGCTGGAAACCCAATGCCCGTTAAGTCCC
GAAGCGAAGGCAGTCCTGCACCGGGCGGTCACCCAGCATCATTGGTCCGCGCGCACCTATCACCGAGTGCTGCGTGTGGC
ACGCACCATCGCCGACCTTGCGCAGCGCGACGCGATCGACATACCGGAGATCACCGAGGCTGTTCAATATCGCGAGATAA
CCATGTCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(439-531)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(227-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

49.812

99.254

0.494
  comM Glaesserella parasuis strain SC1401

48.411

99.813

0.483
  comM Vibrio campbellii strain DS40M4

48.03

99.44

0.478
  comM Haemophilus influenzae Rd KW20

47.842

99.44

0.476
  comM Legionella pneumophila str. Paris

45.88

99.627

0.457
  comM Legionella pneumophila strain ERS1305867

45.88

99.627

0.457
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.899

100

0.42

Multiple sequence alignment