Detailed information NTG0140438

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: CUGBS08_RS01240
• Genome accession: NZ_CP010874
• Coordinates: 207216..207629 (+)
• Length: 137 a.a.
• NCBI ID: WP_000244261.1
• Uniprot ID: -
• Organism: Streptococcus agalactiae strain CU_GBS_08
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 202216..212629

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CUGBS08_RS01215 (CUGBS08_00254)	-	204469..204834 (+)	366	WP_000285373.1	DUF1033 family protein	-
CUGBS08_RS01225 (CUGBS08_00255)	comYA	205007..205978 (+)	972	WP_000250805.1	competence type IV pilus ATPase ComGA	Machinery gene
CUGBS08_RS01230 (CUGBS08_00256)	comYB	205872..206915 (+)	1044	WP_223295889.1	competence type IV pilus assembly protein ComGB	Machinery gene
CUGBS08_RS01235 (CUGBS08_00257)	comGC/cglC	206912..207241 (+)	330	WP_000793380.1	competence type IV pilus major pilin ComGC	Machinery gene
CUGBS08_RS01240 (CUGBS08_00258)	comYD	207216..207629 (+)	414	WP_000244261.1	competence type IV pilus minor pilin ComGD	Machinery gene
CUGBS08_RS01245 (CUGBS08_00259)	comGE	207601..207900 (+)	300	WP_000234804.1	competence type IV pilus minor pilin ComGE	-
CUGBS08_RS01250 (CUGBS08_00260)	comGF	207854..208315 (+)	462	WP_001874812.1	competence type IV pilus minor pilin ComGF	-
CUGBS08_RS01255 (CUGBS08_00261)	comGG	208293..208664 (+)	372	WP_000601104.1	competence type IV pilus minor pilin ComGG	-
CUGBS08_RS01260 (CUGBS08_00262)	comYH	208779..209753 (+)	975	WP_001008574.1	class I SAM-dependent methyltransferase	Machinery gene
CUGBS08_RS01265 (CUGBS08_00263)	-	209785..210978 (+)	1194	WP_000047534.1	acetate kinase	-
CUGBS08_RS01270 (CUGBS08_00264)	-	211130..211336 (+)	207	WP_000798241.1	helix-turn-helix transcriptional regulator	-
CUGBS08_RS10645	-	211395..211532 (+)	138	WP_001865900.1	hypothetical protein	-
CUGBS08_RS01275 (CUGBS08_00265)	-	211573..212028 (+)	456	WP_000905673.1	hypothetical protein	-

Sequence

Protein

• Length: 137 a.a.
• Molecular weight: 15968.43 Da
• Isoelectric Point: 9.9787

>NTDB_id=140438 CUGBS08_RS01240 WP_000244261.1 207216..207629(+) (comYD) [Streptococcus agalactiae strain CU_GBS_08]
MVLRKFQVKAFTVLESLIVLSVVAFMTLVFSTSFNNIFRQVEETIFFISFEHLYRDTQKLSAFGQKKQTLTISHNYLENT
YERLYLPKTVKVVKSDTLAFDTNGGNSSLAKIQFECYRKTVTYQLYIGSGNYRKKEN

Nucleotide

• Length: 414 bp

>NTDB_id=140438 CUGBS08_RS01240 WP_000244261.1 207216..207629(+) (comYD) [Streptococcus agalactiae strain CU_GBS_08]
ATGGTTCTCAGAAAATTTCAAGTTAAAGCATTTACTGTTTTGGAGAGCCTTATTGTATTATCAGTAGTGGCATTTATGAC
GTTAGTATTTTCAACATCATTTAATAATATTTTTAGGCAGGTTGAAGAAACAATTTTCTTCATATCCTTTGAACATCTTT
ATAGAGATACTCAGAAATTGAGTGCATTTGGTCAGAAGAAACAAACCCTTACAATCTCTCATAATTATCTCGAAAATACT
TATGAGAGACTTTATTTACCTAAAACTGTAAAAGTAGTCAAAAGTGATACACTTGCATTTGACACTAATGGAGGGAATTC
AAGCTTGGCAAAAATTCAATTTGAATGTTATAGAAAAACTGTCACGTATCAATTATATATAGGAAGTGGTAATTATCGTA
AGAAAGAAAATTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	51.515	96.35	0.496
comYD	Streptococcus mutans UA159	51.515	96.35	0.496
comYD	Streptococcus gordonii str. Challis substr. CH1	47.407	98.54	0.467
comGD/cglD	Streptococcus mitis NCTC 12261	41.045	97.81	0.401
comGD/cglD	Streptococcus pneumoniae TIGR4	43.307	92.701	0.401
comGD/cglD	Streptococcus mitis SK321	43.307	92.701	0.401
comGD/cglD	Streptococcus pneumoniae Rx1	42.52	92.701	0.394
comGD/cglD	Streptococcus pneumoniae D39	42.52	92.701	0.394
comGD/cglD	Streptococcus pneumoniae R6	42.52	92.701	0.394