Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | CUGBS08_RS01260 | Genome accession | NZ_CP010874 |
| Coordinates | 208779..209753 (+) | Length | 324 a.a. |
| NCBI ID | WP_001008574.1 | Uniprot ID | A0AAV3JGK6 |
| Organism | Streptococcus agalactiae strain CU_GBS_08 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 203779..214753
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CUGBS08_RS01215 (CUGBS08_00254) | - | 204469..204834 (+) | 366 | WP_000285373.1 | DUF1033 family protein | - |
| CUGBS08_RS01225 (CUGBS08_00255) | comYA | 205007..205978 (+) | 972 | WP_000250805.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| CUGBS08_RS01230 (CUGBS08_00256) | comYB | 205872..206915 (+) | 1044 | WP_223295889.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| CUGBS08_RS01235 (CUGBS08_00257) | comGC/cglC | 206912..207241 (+) | 330 | WP_000793380.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| CUGBS08_RS01240 (CUGBS08_00258) | comYD | 207216..207629 (+) | 414 | WP_000244261.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| CUGBS08_RS01245 (CUGBS08_00259) | comGE | 207601..207900 (+) | 300 | WP_000234804.1 | competence type IV pilus minor pilin ComGE | - |
| CUGBS08_RS01250 (CUGBS08_00260) | comGF | 207854..208315 (+) | 462 | WP_001874812.1 | competence type IV pilus minor pilin ComGF | - |
| CUGBS08_RS01255 (CUGBS08_00261) | comGG | 208293..208664 (+) | 372 | WP_000601104.1 | competence type IV pilus minor pilin ComGG | - |
| CUGBS08_RS01260 (CUGBS08_00262) | comYH | 208779..209753 (+) | 975 | WP_001008574.1 | class I SAM-dependent methyltransferase | Machinery gene |
| CUGBS08_RS01265 (CUGBS08_00263) | - | 209785..210978 (+) | 1194 | WP_000047534.1 | acetate kinase | - |
| CUGBS08_RS01270 (CUGBS08_00264) | - | 211130..211336 (+) | 207 | WP_000798241.1 | helix-turn-helix transcriptional regulator | - |
| CUGBS08_RS10645 | - | 211395..211532 (+) | 138 | WP_001865900.1 | hypothetical protein | - |
| CUGBS08_RS01275 (CUGBS08_00265) | - | 211573..212028 (+) | 456 | WP_000905673.1 | hypothetical protein | - |
| CUGBS08_RS01280 (CUGBS08_00266) | - | 212097..212766 (+) | 670 | Protein_221 | CPBP family intramembrane glutamic endopeptidase | - |
| CUGBS08_RS01285 (CUGBS08_00267) | proC | 212787..213557 (-) | 771 | WP_001865901.1 | pyrroline-5-carboxylate reductase | - |
| CUGBS08_RS01290 (CUGBS08_00268) | pepA | 213627..214694 (-) | 1068 | WP_001281323.1 | glutamyl aminopeptidase | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37046.02 Da Isoelectric Point: 4.5224
>NTDB_id=140439 CUGBS08_RS01260 WP_001008574.1 208779..209753(+) (comYH) [Streptococcus agalactiae strain CU_GBS_08]
MNFEKIETAYELILENIQTIENQLKTHIYDALIEQNSYYLGSSCDLDMVVVNNQKLRQLDLSQEEWRRTFQFIFIKSAQT
EQLQANHQFTPDSIGFILLFLLEELTSQETVDVLEIGSGTGNLAQTLLNNSSKELNYMGIEVDDLLIDLSASIAEIIGSS
AQFIQEDAVRPQILKESDVIISDLPVGYYPNDGIAKRYAVSSSKEHTYAHHLLMEQSLKYLKKDGIAIFLAPENLLTSPQ
SDLLKEWLKGYADVIAVLTLPETIFGSRQNAKSIFVLKKQAEQKPETFVYPLTDLQNRENMANFIENFQKWSRENSHYSK
NMIK
MNFEKIETAYELILENIQTIENQLKTHIYDALIEQNSYYLGSSCDLDMVVVNNQKLRQLDLSQEEWRRTFQFIFIKSAQT
EQLQANHQFTPDSIGFILLFLLEELTSQETVDVLEIGSGTGNLAQTLLNNSSKELNYMGIEVDDLLIDLSASIAEIIGSS
AQFIQEDAVRPQILKESDVIISDLPVGYYPNDGIAKRYAVSSSKEHTYAHHLLMEQSLKYLKKDGIAIFLAPENLLTSPQ
SDLLKEWLKGYADVIAVLTLPETIFGSRQNAKSIFVLKKQAEQKPETFVYPLTDLQNRENMANFIENFQKWSRENSHYSK
NMIK
Nucleotide
Download Length: 975 bp
>NTDB_id=140439 CUGBS08_RS01260 WP_001008574.1 208779..209753(+) (comYH) [Streptococcus agalactiae strain CU_GBS_08]
ATGAATTTTGAAAAAATTGAGACAGCCTATGAGCTGATTTTAGAAAATATCCAAACGATTGAGAACCAATTAAAAACTCA
TATTTATGATGCCTTAATTGAACAGAACTCTTATTACCTTGGTTCAAGTTGTGATTTAGATATGGTTGTGGTGAATAACC
AAAAATTACGTCAACTTGACTTAAGTCAAGAAGAATGGCGTCGCACTTTCCAGTTCATTTTTATCAAATCTGCGCAAACA
GAGCAATTACAAGCTAATCATCAGTTTACGCCAGATAGTATTGGTTTTATCTTGTTATTTCTTTTGGAAGAATTAACGAG
TCAAGAGACAGTGGATGTCTTGGAAATTGGAAGTGGAACTGGGAATTTAGCTCAGACTCTCCTCAATAACAGCTCGAAAG
AGTTAAATTATATGGGCATTGAAGTTGATGATCTTTTGATTGATCTATCAGCAAGCATTGCTGAAATTATAGGTTCTAGT
GCCCAATTTATCCAAGAGGATGCTGTTAGACCACAAATTTTGAAAGAAAGCGATGTAATCATTAGTGATTTACCAGTTGG
CTATTATCCTAATGATGGTATTGCTAAACGATATGCTGTATCAAGTTCTAAAGAGCACACCTATGCTCACCATCTATTGA
TGGAGCAATCTCTTAAATATTTGAAAAAAGATGGAATCGCTATATTTTTAGCACCCGAAAACCTTTTAACAAGTCCACAA
AGTGATTTGCTGAAGGAGTGGTTAAAAGGATATGCAGATGTCATTGCCGTTTTAACTCTACCAGAAACTATTTTTGGAAG
TCGTCAAAATGCGAAATCTATATTTGTTCTCAAGAAGCAAGCAGAACAAAAACCAGAAACCTTTGTATATCCGCTGACAG
ATTTGCAAAATCGTGAGAATATGGCAAACTTCATTGAAAATTTTCAAAAATGGAGCAGAGAAAATAGTCATTACTCAAAA
AATATGATAAAATAG
ATGAATTTTGAAAAAATTGAGACAGCCTATGAGCTGATTTTAGAAAATATCCAAACGATTGAGAACCAATTAAAAACTCA
TATTTATGATGCCTTAATTGAACAGAACTCTTATTACCTTGGTTCAAGTTGTGATTTAGATATGGTTGTGGTGAATAACC
AAAAATTACGTCAACTTGACTTAAGTCAAGAAGAATGGCGTCGCACTTTCCAGTTCATTTTTATCAAATCTGCGCAAACA
GAGCAATTACAAGCTAATCATCAGTTTACGCCAGATAGTATTGGTTTTATCTTGTTATTTCTTTTGGAAGAATTAACGAG
TCAAGAGACAGTGGATGTCTTGGAAATTGGAAGTGGAACTGGGAATTTAGCTCAGACTCTCCTCAATAACAGCTCGAAAG
AGTTAAATTATATGGGCATTGAAGTTGATGATCTTTTGATTGATCTATCAGCAAGCATTGCTGAAATTATAGGTTCTAGT
GCCCAATTTATCCAAGAGGATGCTGTTAGACCACAAATTTTGAAAGAAAGCGATGTAATCATTAGTGATTTACCAGTTGG
CTATTATCCTAATGATGGTATTGCTAAACGATATGCTGTATCAAGTTCTAAAGAGCACACCTATGCTCACCATCTATTGA
TGGAGCAATCTCTTAAATATTTGAAAAAAGATGGAATCGCTATATTTTTAGCACCCGAAAACCTTTTAACAAGTCCACAA
AGTGATTTGCTGAAGGAGTGGTTAAAAGGATATGCAGATGTCATTGCCGTTTTAACTCTACCAGAAACTATTTTTGGAAG
TCGTCAAAATGCGAAATCTATATTTGTTCTCAAGAAGCAAGCAGAACAAAAACCAGAAACCTTTGTATATCCGCTGACAG
ATTTGCAAAATCGTGAGAATATGGCAAACTTCATTGAAAATTTTCAAAAATGGAGCAGAGAAAATAGTCATTACTCAAAA
AATATGATAAAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA159 |
67.302 |
97.222 |
0.654 |
| comYH | Streptococcus mutans UA140 |
67.302 |
97.222 |
0.654 |