Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RG33_RS02810 Genome accession   NZ_CP010133
Coordinates   545990..546619 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain C11     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 540990..551619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG33_RS02795 (RG33_02545) helD 541232..543286 (-) 2055 WP_001297106.1 DNA helicase IV -
  RG33_RS02800 (RG33_02550) - 543409..543855 (+) 447 WP_001261235.1 YccF domain-containing protein -
  RG33_RS02805 (RG33_02555) yccS 543865..546027 (+) 2163 WP_000875023.1 YccS family putative transporter -
  RG33_RS02810 (RG33_02560) sxy/tfoX 545990..546619 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  RG33_RS02815 (RG33_02565) sulA 546838..547347 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  RG33_RS02825 (RG33_02570) ompA 547704..548756 (+) 1053 WP_001307702.1 porin OmpA -
  RG33_RS02830 (RG33_02575) matP 548832..549284 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  RG33_RS02835 (RG33_02580) - 549470..551230 (+) 1761 WP_040090211.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=134449 RG33_RS02810 WP_000839153.1 545990..546619(-) (sxy/tfoX) [Escherichia coli strain C11]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=134449 RG33_RS02810 WP_000839153.1 545990..546619(-) (sxy/tfoX) [Escherichia coli strain C11]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment