Detailed information NTG0131197

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: ADJ80_RS03965
• Genome accession: NZ_CP012067
• Coordinates: 791319..791978 (+)
• Length: 219 a.a.
• NCBI ID: WP_050693037.1
• Uniprot ID: A0ABX9VXH1
• Organism: Aggregatibacter aphrophilus strain W10433
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 786319..796978

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ADJ80_RS03930 (ADJ80_03950)	-	786527..786739 (-)	213	WP_048750443.1	helix-turn-helix domain-containing protein	-
ADJ80_RS03935 (ADJ80_03955)	-	786816..787511 (+)	696	WP_050693031.1	helix-turn-helix domain-containing protein	-
ADJ80_RS03940 (ADJ80_03960)	crp	787811..788455 (-)	645	WP_050693032.1	cAMP-activated global transcriptional regulator CRP	Regulator
ADJ80_RS03945 (ADJ80_03965)	-	788493..788711 (-)	219	WP_050693033.1	YheU family protein	-
ADJ80_RS03950 (ADJ80_03970)	slmA	788735..789319 (-)	585	Protein_767	nucleoid occlusion factor SlmA	-
ADJ80_RS03955 (ADJ80_03975)	dut	789334..789789 (-)	456	WP_050693035.1	dUTP diphosphatase	-
ADJ80_RS03960 (ADJ80_03980)	coaBC	789942..791141 (-)	1200	WP_050693036.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
ADJ80_RS03965 (ADJ80_03985)	radC	791319..791978 (+)	660	WP_050693037.1	RadC family protein	Machinery gene
ADJ80_RS03970 (ADJ80_03990)	rpmB	792189..792425 (+)	237	WP_005542826.1	50S ribosomal protein L28	-
ADJ80_RS03975 (ADJ80_03995)	rpmG	792437..792607 (+)	171	WP_005544948.1	50S ribosomal protein L33	-
ADJ80_RS03980 (ADJ80_04000)	mutM	792677..793492 (+)	816	WP_050693038.1	DNA-formamidopyrimidine glycosylase	-
ADJ80_RS03985 (ADJ80_04005)	-	793489..794550 (-)	1062	WP_050693039.1	glycosyltransferase family 9 protein	-
ADJ80_RS03990 (ADJ80_04010)	-	794553..795578 (-)	1026	WP_050693040.1	glycosyltransferase family 9 protein	-
ADJ80_RS03995 (ADJ80_04015)	-	795575..796270 (-)	696	WP_050693041.1	glycosyltransferase family 25 protein	-
ADJ80_RS04000 (ADJ80_04020)	rpmE	796330..796542 (-)	213	WP_005701793.1	50S ribosomal protein L31	-

Sequence

Protein

• Length: 219 a.a.
• Molecular weight: 24789.87 Da
• Isoelectric Point: 6.3340

>NTDB_id=131197 ADJ80_RS03965 WP_050693037.1 791319..791978(+) (radC) [Aggregatibacter aphrophilus strain W10433]
MNEPLMPREKLLQYGAAALSDEELLAIFLRTGIKDCPVMQLSRNVLQYFGSLRGLITASQKQFCAVKGIGVTQFIQLQAC
TEMTRRYLLAELKEEHCFTSSDAVKMYLQTELEGLEREVFLVLFLDTQHRLIKQENLFLGTINQAMVYPREIIKEALACN
AAALILAHNHPSGVAEPSFSDRSITQKIKQAAELMEIRVLDHFVIGRGCYFSFAEQNLL

Nucleotide

• Length: 660 bp

>NTDB_id=131197 ADJ80_RS03965 WP_050693037.1 791319..791978(+) (radC) [Aggregatibacter aphrophilus strain W10433]
ATGAATGAACCATTAATGCCAAGAGAAAAATTGTTGCAATACGGCGCGGCGGCGTTAAGCGATGAGGAGCTATTGGCCAT
TTTTTTACGTACGGGCATTAAGGATTGTCCCGTCATGCAATTGTCCCGCAATGTGTTGCAATATTTTGGCTCTTTACGCG
GCTTAATTACGGCAAGCCAAAAGCAATTTTGTGCTGTAAAAGGCATTGGTGTTACCCAGTTTATTCAGTTACAGGCTTGT
ACCGAAATGACTAGGCGTTATTTGCTAGCGGAATTAAAGGAAGAACATTGTTTCACTTCAAGTGATGCGGTGAAAATGTA
TCTGCAAACCGAGCTGGAAGGTTTGGAACGAGAAGTCTTTTTAGTGTTGTTTTTGGATACGCAACATCGTTTAATCAAGC
AGGAAAACCTTTTCCTCGGCACCATCAATCAGGCCATGGTGTATCCGCGGGAGATCATTAAAGAAGCCTTAGCCTGTAAT
GCGGCGGCGCTTATTTTGGCACATAATCACCCCTCGGGTGTGGCTGAACCGAGCTTTTCCGATCGAAGTATTACACAAAA
AATCAAGCAGGCGGCTGAGTTAATGGAAATTCGGGTATTGGATCATTTTGTGATTGGTCGCGGCTGTTATTTTTCCTTTG
CGGAACAAAATCTTCTCTAA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (98-217)

• UPF0758 N-terminal (UPF0758_N) (6-73)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Haemophilus influenzae Rd KW20	66.972	99.543	0.667
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	38.889	98.63	0.384
radC	Streptococcus gordonii str. Challis substr. CH1	37.788	99.087	0.374
radC	Streptococcus pneumoniae TIGR4	37.85	97.717	0.37
radC	Streptococcus pneumoniae R6	37.383	97.717	0.365
radC	Streptococcus pneumoniae D39	37.383	97.717	0.365