Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | FORC16_RS11920 | Genome accession | NZ_CP011775 |
| Coordinates | 2643812..2644264 (+) | Length | 150 a.a. |
| NCBI ID | WP_060530791.1 | Uniprot ID | B7U2W1 |
| Organism | Vibrio vulnificus strain FORC_016 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2638812..2649264
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC16_RS11905 (FORC16_2368) | pdhR | 2640884..2641651 (-) | 768 | WP_011079554.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| FORC16_RS11910 (FORC16_2370) | ampD | 2642040..2642612 (-) | 573 | WP_060530795.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| FORC16_RS11915 (FORC16_2371) | nadC | 2642705..2643592 (+) | 888 | WP_060530792.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| FORC16_RS11920 (FORC16_2372) | pilA | 2643812..2644264 (+) | 453 | WP_060530791.1 | pilin | Machinery gene |
| FORC16_RS11925 (FORC16_2373) | pilB | 2644269..2645954 (+) | 1686 | WP_060530787.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| FORC16_RS11930 (FORC16_2374) | pilC | 2646003..2647229 (+) | 1227 | WP_045618629.1 | type II secretion system F family protein | Machinery gene |
| FORC16_RS11935 (FORC16_2375) | pilD | 2647323..2648192 (+) | 870 | WP_013571138.1 | prepilin peptidase | Machinery gene |
| FORC16_RS11940 (FORC16_2376) | coaE | 2648194..2648802 (+) | 609 | WP_060530785.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 150 a.a. Molecular weight: 16055.60 Da Isoelectric Point: 9.9449
>NTDB_id=129350 FORC16_RS11920 WP_060530791.1 2643812..2644264(+) (pilA) [Vibrio vulnificus strain FORC_016]
MMKKLNKTKKQQGFTLIELMIVVAIIGVLAAIAIPAYQNYVKKSEAAIGLATAKSLITNVDMYIQEKGNFPTNDATGFTA
VGATTTMNKLGTLSFESISGANGTIKFLFNNKSSIDTAFVSIAKTNSGWSCSFTTSNKLTNEEIPKACQP
MMKKLNKTKKQQGFTLIELMIVVAIIGVLAAIAIPAYQNYVKKSEAAIGLATAKSLITNVDMYIQEKGNFPTNDATGFTA
VGATTTMNKLGTLSFESISGANGTIKFLFNNKSSIDTAFVSIAKTNSGWSCSFTTSNKLTNEEIPKACQP
Nucleotide
Download Length: 453 bp
>NTDB_id=129350 FORC16_RS11920 WP_060530791.1 2643812..2644264(+) (pilA) [Vibrio vulnificus strain FORC_016]
ATGATGAAGAAATTAAACAAAACCAAGAAACAACAAGGTTTTACCTTGATTGAATTAATGATAGTAGTAGCGATTATTGG
TGTGTTAGCTGCAATTGCTATCCCGGCATATCAAAATTATGTCAAAAAATCTGAGGCAGCTATCGGTTTAGCTACAGCAA
AATCACTGATAACAAACGTAGATATGTATATACAAGAAAAAGGAAACTTCCCTACAAATGATGCGACAGGCTTCACTGCG
GTAGGTGCAACAACGACAATGAATAAGTTAGGCACTTTGTCTTTCGAGAGTATAAGTGGCGCCAATGGCACGATTAAGTT
TTTATTTAACAATAAATCTTCAATAGATACAGCCTTCGTATCAATAGCAAAAACCAATAGTGGTTGGAGCTGTAGCTTTA
CAACTAGCAATAAACTTACAAACGAAGAAATACCAAAAGCTTGTCAGCCATAA
ATGATGAAGAAATTAAACAAAACCAAGAAACAACAAGGTTTTACCTTGATTGAATTAATGATAGTAGTAGCGATTATTGG
TGTGTTAGCTGCAATTGCTATCCCGGCATATCAAAATTATGTCAAAAAATCTGAGGCAGCTATCGGTTTAGCTACAGCAA
AATCACTGATAACAAACGTAGATATGTATATACAAGAAAAAGGAAACTTCCCTACAAATGATGCGACAGGCTTCACTGCG
GTAGGTGCAACAACGACAATGAATAAGTTAGGCACTTTGTCTTTCGAGAGTATAAGTGGCGCCAATGGCACGATTAAGTT
TTTATTTAACAATAAATCTTCAATAGATACAGCCTTCGTATCAATAGCAAAAACCAATAGTGGTTGGAGCTGTAGCTTTA
CAACTAGCAATAAACTTACAAACGAAGAAATACCAAAAGCTTGTCAGCCATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
46.667 |
100 |
0.467 |
| pilA | Vibrio cholerae strain A1552 |
46.667 |
100 |
0.467 |
| pilA | Vibrio cholerae C6706 |
46.667 |
100 |
0.467 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
49.612 |
86 |
0.427 |
| pilA | Pseudomonas aeruginosa PAK |
41.558 |
100 |
0.427 |
| pilA | Acinetobacter baumannii strain A118 |
40.278 |
96 |
0.387 |