Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   LA24_RS05885 Genome accession   NZ_CP009419
Coordinates   1123063..1123536 (+) Length   157 a.a.
NCBI ID   WP_002248276.1    Uniprot ID   -
Organism   Neisseria meningitidis M7124     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1118063..1128536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA24_RS05860 (LA24_06175) dnaB 1118678..1120084 (+) 1407 WP_002248271.1 replicative DNA helicase -
  LA24_RS05865 (LA24_06180) pilH 1120239..1120916 (+) 678 WP_002248272.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LA24_RS05870 (LA24_06185) pilV 1120940..1121551 (+) 612 WP_002248273.1 type IV pilus modification protein PilV Machinery gene
  LA24_RS05875 (LA24_06190) pilJ 1121548..1122486 (+) 939 WP_002248274.1 PilW family protein Machinery gene
  LA24_RS05880 (LA24_06195) pilK 1122465..1123058 (+) 594 WP_002248275.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LA24_RS05885 (LA24_06200) pilX 1123063..1123536 (+) 474 WP_002248276.1 PilX family type IV pilin Machinery gene
  LA24_RS05895 (LA24_06205) - 1125595..1126023 (-) 429 Protein_1110 AzlC family ABC transporter permease -
  LA24_RS05900 (LA24_06210) dut 1126166..1126618 (+) 453 WP_002220679.1 dUTP diphosphatase -
  LA24_RS05905 (LA24_06215) dapC 1126694..1127881 (+) 1188 WP_002220680.1 succinyldiaminopimelate transaminase -
  LA24_RS14920 - 1127969..1128094 (+) 126 Protein_1113 IS5/IS1182 family transposase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17528.29 Da        Isoelectric Point: 9.4344

>NTDB_id=129051 LA24_RS05885 WP_002248276.1 1123063..1123536(+) (pilX) [Neisseria meningitidis M7124]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNISKQFILKNPLDDNQTIKSKLEIFVSGYKM
NPKIAEKYNVSVHFVNKEKPRAYSLVGVPKTGTGYTLSVWMNSVGDGYKCRDAASARAHLETLSSDVGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=129051 LA24_RS05885 WP_002248276.1 1123063..1123536(+) (pilX) [Neisseria meningitidis M7124]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTCGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATATTTCCAAAC
AGTTTATTTTGAAAAATCCCCTGGACGATAATCAGACCATCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCGAAAAATATAATGTTTCGGTGCATTTTGTCAATAAGGAAAAACCAAGGGCATACAGCTTGGTCGG
CGTTCCAAAGACGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCTGCCCGAGCCCATTTGGAGACCTTGTCCTCAGATGTCGGCTGTGAAGCCTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterproScan.

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Neisseria meningitidis 8013

99.363

100

0.994
  pilL Neisseria gonorrhoeae MS11

86.624

100

0.866

Multiple sequence alignment