Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   LA24_RS05875 Genome accession   NZ_CP009419
Coordinates   1121548..1122486 (+) Length   312 a.a.
NCBI ID   WP_002248274.1    Uniprot ID   -
Organism   Neisseria meningitidis M7124     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1116548..1127486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA24_RS05850 (LA24_06165) - 1116847..1117356 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  LA24_RS05855 (LA24_06170) - 1117928..1118515 (-) 588 WP_002220670.1 superoxide dismutase -
  LA24_RS05860 (LA24_06175) dnaB 1118678..1120084 (+) 1407 WP_002248271.1 replicative DNA helicase -
  LA24_RS05865 (LA24_06180) pilH 1120239..1120916 (+) 678 WP_002248272.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LA24_RS05870 (LA24_06185) pilV 1120940..1121551 (+) 612 WP_002248273.1 type IV pilus modification protein PilV Machinery gene
  LA24_RS05875 (LA24_06190) pilJ 1121548..1122486 (+) 939 WP_002248274.1 PilW family protein Machinery gene
  LA24_RS05880 (LA24_06195) pilK 1122465..1123058 (+) 594 WP_002248275.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LA24_RS05885 (LA24_06200) pilX 1123063..1123536 (+) 474 WP_002248276.1 PilX family type IV pilin Machinery gene
  LA24_RS05895 (LA24_06205) - 1125595..1126023 (-) 429 Protein_1110 AzlC family ABC transporter permease -
  LA24_RS05900 (LA24_06210) dut 1126166..1126618 (+) 453 WP_002220679.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34374.05 Da        Isoelectric Point: 8.9869

>NTDB_id=129049 LA24_RS05875 WP_002248274.1 1121548..1122486(+) (pilJ) [Neisseria meningitidis M7124]
MRRKMLNVPKGSYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKDVVSDVAQKNRLFSLKRNSTNKLIPITESLNIGYPGFTQRLNALIFQYGIDDVNASADTTVVSSCAKIAK
PGKKISTLQEAKSALQITNDDKQNGNITRQRHVVNAYAVGRIAGEEGLFRFQLNDDGQWGNPQLLVKKINKMDIRYIYVS
GCPEDDDAGKEETFRYTDKFNSAQDAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNICANRTL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=129049 LA24_RS05875 WP_002248274.1 1121548..1122486(+) (pilJ) [Neisseria meningitidis M7124]
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAGTTATGATGGTATGAAGGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCTATTCAACAGGATTTGCGGAATGCGGCAACATTAATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGGATGTTGTTTCCGATGTGGCGCAAAAAAACCGTCTTTTTTCCTTAAAAAG
GAACAGTACAAATAAACTTATCCCCATAACGGAATCTTTAAATATCGGATATCCGGGTTTTACCCAGCGCCTTAACGCAT
TGATTTTCCAATACGGAATCGATGATGTTAATGCAAGCGCCGATACTACCGTCGTCAGCAGCTGTGCCAAAATAGCAAAA
CCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGCATTACAGATTACTAATGATGATAAACAAAATGGAAATAT
CACCCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGGTGAGGAAGGTTTGTTCCGCTTCCAATTGA
ATGATGATGGGCAGTGGGGTAATCCTCAGTTGTTGGTTAAAAAGATTAATAAAATGGATATACGGTATATTTATGTTTCC
GGCTGTCCTGAAGATGACGATGCCGGCAAAGAGGAAACATTCAGATATACGGATAAATTCAACAGCGCCCAAGATGCTGT
TACGCCCGCCGGGGTGGAGGTTTTATTGAGTAGCGGTACTGATACCAAGATTGCCGCTTCTTCAGACAATCATATTTATG
CTTACCGTATCGATGCGACAATACGCGGGGGAAATATATGCGCAAACAGAACGCTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

80.063

100

0.811

Multiple sequence alignment