Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   LA24_RS05870 Genome accession   NZ_CP009419
Coordinates   1120940..1121551 (+) Length   203 a.a.
NCBI ID   WP_002248273.1    Uniprot ID   -
Organism   Neisseria meningitidis M7124     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1115940..1126551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA24_RS14915 - 1116031..1116138 (+) 108 Protein_1100 IS5/IS1182 family transposase -
  LA24_RS05845 (LA24_06160) - 1116183..1116515 (+) 333 WP_002226445.1 hypothetical protein -
  LA24_RS05850 (LA24_06165) - 1116847..1117356 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  LA24_RS05855 (LA24_06170) - 1117928..1118515 (-) 588 WP_002220670.1 superoxide dismutase -
  LA24_RS05860 (LA24_06175) dnaB 1118678..1120084 (+) 1407 WP_002248271.1 replicative DNA helicase -
  LA24_RS05865 (LA24_06180) pilH 1120239..1120916 (+) 678 WP_002248272.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LA24_RS05870 (LA24_06185) pilV 1120940..1121551 (+) 612 WP_002248273.1 type IV pilus modification protein PilV Machinery gene
  LA24_RS05875 (LA24_06190) pilJ 1121548..1122486 (+) 939 WP_002248274.1 PilW family protein Machinery gene
  LA24_RS05880 (LA24_06195) pilK 1122465..1123058 (+) 594 WP_002248275.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LA24_RS05885 (LA24_06200) pilX 1123063..1123536 (+) 474 WP_002248276.1 PilX family type IV pilin Machinery gene
  LA24_RS05895 (LA24_06205) - 1125595..1126023 (-) 429 Protein_1110 AzlC family ABC transporter permease -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22100.14 Da        Isoelectric Point: 4.8335

>NTDB_id=129048 LA24_RS05870 WP_002248273.1 1120940..1121551(+) (pilV) [Neisseria meningitidis M7124]
MKNNDCFRLKDSQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKN
YNLYMRNHTLSAVDGDFAIDAIKTKAQLAEEQLKRFSYELKNALPDAAAIRYAVCKDSLGAAPTLSAGSTFSPNCDNKAN
GDTLIKVLWVNDSAGDSDIARTNLEVSGDNIVYTYQARVGGRE

Nucleotide


Download         Length: 612 bp        

>NTDB_id=129048 LA24_RS05870 WP_002248273.1 1120940..1121551(+) (pilV) [Neisseria meningitidis M7124]
ATGAAGAATAATGATTGCTTCCGCCTGAAAGATTCCCAGTCCGGTATGGCGCTGATAGAAGTCTTGGTTGCTATGCTCGT
TCTGACCATCGGTATTTTGGCGTTACTGTCTGTGCAGTTGCGGACAGTCGCTTCCGTCAGGGAGGCGGAGACACAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTCGGACAGCAACAAGAAAAAC
TATAATCTTTACATGAGAAACCATACACTATCAGCTGTGGATGGCGATTTTGCGATTGATGCCATAAAAACTAAGGCGCA
GTTGGCAGAGGAACAATTGAAGAGATTTAGTTATGAGCTGAAAAATGCCTTGCCGGATGCGGCAGCCATCCGTTACGCCG
TCTGCAAGGATTCGTTGGGTGCTGCGCCGACATTGTCCGCCGGCAGTACTTTTTCTCCAAATTGCGATAATAAGGCAAAC
GGAGATACTTTAATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATCGCCCGTACGAATCTTGAGGTGAG
CGGCGACAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCGGGAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Neisseria meningitidis 8013

91.304

100

0.931
  pilI Neisseria gonorrhoeae MS11

82.266

100

0.823
  pilV Neisseria gonorrhoeae MS11

82.266

100

0.823

Multiple sequence alignment