Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   LA24_RS05880 Genome accession   NZ_CP009419
Coordinates   1122465..1123058 (+) Length   197 a.a.
NCBI ID   WP_002248275.1    Uniprot ID   -
Organism   Neisseria meningitidis M7124     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1117465..1128058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA24_RS05855 (LA24_06170) - 1117928..1118515 (-) 588 WP_002220670.1 superoxide dismutase -
  LA24_RS05860 (LA24_06175) dnaB 1118678..1120084 (+) 1407 WP_002248271.1 replicative DNA helicase -
  LA24_RS05865 (LA24_06180) pilH 1120239..1120916 (+) 678 WP_002248272.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LA24_RS05870 (LA24_06185) pilV 1120940..1121551 (+) 612 WP_002248273.1 type IV pilus modification protein PilV Machinery gene
  LA24_RS05875 (LA24_06190) pilJ 1121548..1122486 (+) 939 WP_002248274.1 PilW family protein Machinery gene
  LA24_RS05880 (LA24_06195) pilK 1122465..1123058 (+) 594 WP_002248275.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LA24_RS05885 (LA24_06200) pilX 1123063..1123536 (+) 474 WP_002248276.1 PilX family type IV pilin Machinery gene
  LA24_RS05895 (LA24_06205) - 1125595..1126023 (-) 429 Protein_1110 AzlC family ABC transporter permease -
  LA24_RS05900 (LA24_06210) dut 1126166..1126618 (+) 453 WP_002220679.1 dUTP diphosphatase -
  LA24_RS05905 (LA24_06215) dapC 1126694..1127881 (+) 1188 WP_002220680.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21725.67 Da        Isoelectric Point: 6.3911

>NTDB_id=129050 LA24_RS05880 WP_002248275.1 1122465..1123058(+) (pilK) [Neisseria meningitidis M7124]
MRKQNALTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCGKGLCTAVNVRTNNDNEEAFDNIVVQGKPTVEAVKRFCPANSTDLCIDKKGMEYKKGTRSVSKPPRYIIE
YLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 594 bp        

>NTDB_id=129050 LA24_RS05880 WP_002248275.1 1122465..1123058(+) (pilK) [Neisseria meningitidis M7124]
ATGCGCAAACAGAACGCTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCGCTGTTTATCGTGCTGATGGT
AATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGGAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATGATAATGA
AGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTTTTGCCCTGCAAATTCTACCG
ACCTGTGCATTGACAAGAAAGGGATGGAATATAAGAAAGGCACGAGAAGCGTCAGCAAACCACCGCGCTATATTATCGAA
TATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGTCGT
CCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-192)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

85.644

100

0.878

Multiple sequence alignment