Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   LA24_RS05865 Genome accession   NZ_CP009419
Coordinates   1120239..1120916 (+) Length   225 a.a.
NCBI ID   WP_002248272.1    Uniprot ID   -
Organism   Neisseria meningitidis M7124     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1115239..1125916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA24_RS14915 - 1116031..1116138 (+) 108 Protein_1100 IS5/IS1182 family transposase -
  LA24_RS05845 (LA24_06160) - 1116183..1116515 (+) 333 WP_002226445.1 hypothetical protein -
  LA24_RS05850 (LA24_06165) - 1116847..1117356 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  LA24_RS05855 (LA24_06170) - 1117928..1118515 (-) 588 WP_002220670.1 superoxide dismutase -
  LA24_RS05860 (LA24_06175) dnaB 1118678..1120084 (+) 1407 WP_002248271.1 replicative DNA helicase -
  LA24_RS05865 (LA24_06180) pilH 1120239..1120916 (+) 678 WP_002248272.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LA24_RS05870 (LA24_06185) pilV 1120940..1121551 (+) 612 WP_002248273.1 type IV pilus modification protein PilV Machinery gene
  LA24_RS05875 (LA24_06190) pilJ 1121548..1122486 (+) 939 WP_002248274.1 PilW family protein Machinery gene
  LA24_RS05880 (LA24_06195) pilK 1122465..1123058 (+) 594 WP_002248275.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LA24_RS05885 (LA24_06200) pilX 1123063..1123536 (+) 474 WP_002248276.1 PilX family type IV pilin Machinery gene

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25328.01 Da        Isoelectric Point: 10.0104

>NTDB_id=129047 LA24_RS05865 WP_002248272.1 1120239..1120916(+) (pilH) [Neisseria meningitidis M7124]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAERIANLLRFSRGEAVRLNLPVYICPVQVKKDGTVN
NKCDSGKKGQGMLAFGDKNGNKGYDNDTADVLLRSVVLNDDINDKRINYAFNHIAFGQTQPTTDRVVWTFNQNGTFGYTK
DQHLTKQSSFFYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCPRGDRRTRRTMCQYK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=129047 LA24_RS05865 WP_002248272.1 1120239..1120916(+) (pilH) [Neisseria meningitidis M7124]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCGGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTACGGTCAAC
AATAAATGTGACTCCGGCAAGAAGGGGCAGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGGATATGACAATGA
TACGGCGGATGTTCTTCTCCGCAGTGTGGTATTGAATGATGATATCAATGATAAGCGGATTAATTATGCCTTCAACCATA
TCGCTTTTGGTCAGACTCAGCCGACCACCGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGAAA
GACCAGCATCTTACAAAACAATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGCCCTAGGGGTG
ATCGGCGTACTCGGCGTACTATGTGCCAGTATAAATAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

84.259

96

0.809

Multiple sequence alignment