Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   LA50_RS01560 Genome accession   NZ_CP009418
Coordinates   259451..260050 (-) Length   199 a.a.
NCBI ID   WP_002248501.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NM3686     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 254451..265050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA50_RS15045 - 254498..254623 (-) 126 Protein_290 IS5/IS1182 family transposase -
  LA50_RS01535 (LA50_01620) dapC 254711..255898 (-) 1188 WP_002220680.1 succinyldiaminopimelate transaminase -
  LA50_RS01540 (LA50_01625) dut 255974..256426 (-) 453 WP_002220679.1 dUTP diphosphatase -
  LA50_RS01545 (LA50_01630) - 256569..256997 (+) 429 Protein_293 AzlC family ABC transporter permease -
  LA50_RS01555 (LA50_01635) pilX 258973..259446 (-) 474 WP_002248276.1 PilX family type IV pilin Machinery gene
  LA50_RS01560 (LA50_01640) pilK 259451..260050 (-) 600 WP_002248501.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LA50_RS01565 (LA50_01645) pilJ 260029..260967 (-) 939 WP_002248500.1 PilW family protein Machinery gene
  LA50_RS01570 (LA50_01650) pilV 260964..261578 (-) 615 WP_002248499.1 type IV pilus modification protein PilV Machinery gene
  LA50_RS01575 (LA50_01655) pilH 261602..262279 (-) 678 WP_002213841.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LA50_RS01580 (LA50_01660) dnaB 262588..263994 (-) 1407 WP_002248498.1 replicative DNA helicase -
  LA50_RS01585 (LA50_01665) - 264157..264744 (+) 588 WP_002248497.1 superoxide dismutase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21935.90 Da        Isoelectric Point: 6.9099

>NTDB_id=128977 LA50_RS01560 WP_002248501.1 259451..260050(-) (pilK) [Neisseria meningitidis strain NM3686]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISTNESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCGKGLCTAVNVRTNTNNGNEEAFDNIVVQGKPIVEAVKRFCPANSTDLCIDKKGMEYKKGTRSVSKPPHYI
IEYLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 600 bp        

>NTDB_id=128977 LA50_RS01560 WP_002248501.1 259451..260050(-) (pilK) [Neisseria meningitidis strain NM3686]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCACTGTTTATCGTACTGATGGT
GATGATCGTCGTGGCATTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGAGGATCAGTACCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGTGAAAACTGTGGAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATACAAATAATGG
TAATGAAGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCATCGTTGAGGCGGTGAAGCGTTTTTGCCCTGCAAATT
CTACCGACCTGTGCATTGACAAGAAAGGGATGGAATATAAGAAAGGCACGAGAAGCGTCAGCAAACCACCACACTATATT
ATCGAATATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGT
GGTCGTCCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-194)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

85.222

100

0.869

Multiple sequence alignment