Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   LA50_RS01575 Genome accession   NZ_CP009418
Coordinates   261602..262279 (-) Length   225 a.a.
NCBI ID   WP_002213841.1    Uniprot ID   E0N9M5
Organism   Neisseria meningitidis strain NM3686     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 256602..267279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA50_RS01555 (LA50_01635) pilX 258973..259446 (-) 474 WP_002248276.1 PilX family type IV pilin Machinery gene
  LA50_RS01560 (LA50_01640) pilK 259451..260050 (-) 600 WP_002248501.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LA50_RS01565 (LA50_01645) pilJ 260029..260967 (-) 939 WP_002248500.1 PilW family protein Machinery gene
  LA50_RS01570 (LA50_01650) pilV 260964..261578 (-) 615 WP_002248499.1 type IV pilus modification protein PilV Machinery gene
  LA50_RS01575 (LA50_01655) pilH 261602..262279 (-) 678 WP_002213841.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LA50_RS01580 (LA50_01660) dnaB 262588..263994 (-) 1407 WP_002248498.1 replicative DNA helicase -
  LA50_RS01585 (LA50_01665) - 264157..264744 (+) 588 WP_002248497.1 superoxide dismutase -
  LA50_RS01590 (LA50_01670) - 265390..265899 (-) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  LA50_RS01595 (LA50_01675) - 266231..266563 (-) 333 WP_002226445.1 hypothetical protein -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25183.79 Da        Isoelectric Point: 9.8985

>NTDB_id=128980 LA50_RS01575 WP_002213841.1 261602..262279(-) (pilH) [Neisseria meningitidis strain NM3686]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAERIANLLRFSRGEAVRLNLPVYICPVQVKKDGTPN
NKCDSGKKGQGMLAFGDKNGNKGYDNDTADVLLRSVVLNDDINDKRINYAFNHIAFGQTQPTADRVVWTFNQNGTFGYST
NQDLTNTSKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCPRGDRRTRRTMCQYK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=128980 LA50_RS01575 WP_002213841.1 261602..262279(-) (pilH) [Neisseria meningitidis strain NM3686]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCGGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTACGCCCAAC
AATAAATGTGACTCCGGCAAGAAGGGGCAGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGGATATGACAATGA
TACGGCGGATGTTCTTCTCCGCAGTGTGGTATTGAATGATGATATCAATGATAAGCGGATTAATTATGCCTTCAACCATA
TCGCTTTCGGTCAGACTCAGCCGACCGCTGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATTCTACC
AATCAGGATCTCACGAATACTTCCAAATTTGTTTACTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGCCCTAGGGGTG
ATCGGCGTACTCGGCGTACTATGTGCCAGTATAAATAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

83.036

99.556

0.827

Multiple sequence alignment