Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   LA50_RS01565 Genome accession   NZ_CP009418
Coordinates   260029..260967 (-) Length   312 a.a.
NCBI ID   WP_002248500.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NM3686     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 255029..265967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA50_RS01540 (LA50_01625) dut 255974..256426 (-) 453 WP_002220679.1 dUTP diphosphatase -
  LA50_RS01545 (LA50_01630) - 256569..256997 (+) 429 Protein_293 AzlC family ABC transporter permease -
  LA50_RS01555 (LA50_01635) pilX 258973..259446 (-) 474 WP_002248276.1 PilX family type IV pilin Machinery gene
  LA50_RS01560 (LA50_01640) pilK 259451..260050 (-) 600 WP_002248501.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LA50_RS01565 (LA50_01645) pilJ 260029..260967 (-) 939 WP_002248500.1 PilW family protein Machinery gene
  LA50_RS01570 (LA50_01650) pilV 260964..261578 (-) 615 WP_002248499.1 type IV pilus modification protein PilV Machinery gene
  LA50_RS01575 (LA50_01655) pilH 261602..262279 (-) 678 WP_002213841.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LA50_RS01580 (LA50_01660) dnaB 262588..263994 (-) 1407 WP_002248498.1 replicative DNA helicase -
  LA50_RS01585 (LA50_01665) - 264157..264744 (+) 588 WP_002248497.1 superoxide dismutase -
  LA50_RS01590 (LA50_01670) - 265390..265899 (-) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34188.87 Da        Isoelectric Point: 9.6625

>NTDB_id=128978 LA50_RS01565 WP_002248500.1 260029..260967(-) (pilJ) [Neisseria meningitidis strain NM3686]
MRRKMLNVPKGSYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLSAQQDLRNAATLIVRDARMAGGFG
CFNMSEHPATDVVSDVAQKNRSFSLKRNGIDKLIPIAESSNIGYPGFTQRLNALIFQYGIDDVNASADTTVVSSCSKIAK
PGKKISTLQEAKSALQITNDDKQNGNITRQRHVVNAYAVGRIAGEEGLFRFQLDDKGKWGNPQLLAKKVRRMDVRYIYVS
GCPEDDDAGKEETFKYTDKFDKSKNAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNVCANRTL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=128978 LA50_RS01565 WP_002248500.1 260029..260967(-) (pilJ) [Neisseria meningitidis strain NM3686]
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAGTTATGATGGTATGAAGGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTTACATCTCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTTCCGCACAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCAGGGGGCTTCGGT
TGTTTCAATATGTCCGAGCATCCTGCAACTGATGTTGTTTCCGATGTGGCGCAAAAAAACCGTTCTTTTTCCTTAAAAAG
GAACGGTATAGATAAACTTATTCCCATAGCGGAATCTTCAAATATCGGATATCCGGGTTTTACCCAGCGCCTTAACGCAT
TGATTTTCCAATACGGAATCGATGATGTTAATGCAAGCGCCGATACTACCGTCGTCAGCAGCTGTTCCAAAATAGCAAAA
CCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGCATTACAGATTACTAATGATGATAAACAAAATGGAAATAT
CACCCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGGTGAGGAAGGTTTGTTCCGCTTCCAATTGG
ATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGGTTAGACGTATGGATGTGCGGTATATCTATGTTTCC
GGCTGTCCTGAAGATGACGATGCCGGCAAAGAGGAAACATTCAAATATACGGATAAATTCGACAAATCCAAAAATGCTGT
TACGCCCGCCGGGGTGGAGGTTTTATTGAGTAGCGGTACTGATACCAAGATTGCCGCTTCTTCAGACAATCATATTTATG
CTTACCGTATCGATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

80.696

100

0.817

Multiple sequence alignment