Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CH47_RS19995 Genome accession   NZ_CP009367
Coordinates   4290779..4291330 (+) Length   183 a.a.
NCBI ID   WP_005174387.1    Uniprot ID   -
Organism   Yersinia enterocolitica strain WA     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4285779..4296330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH47_RS19985 (CH47_3951) - 4287136..4287489 (+) 354 WP_005174391.1 MmcQ/YjbR family DNA-binding protein -
  CH47_RS19990 (CH47_3952) uvrA 4287548..4290379 (-) 2832 WP_005174389.1 excinuclease ABC subunit UvrA -
  CH47_RS19995 (CH47_3953) ssb 4290779..4291330 (+) 552 WP_005174387.1 single-stranded DNA-binding protein SSB1 Machinery gene
  CH47_RS20000 (CH47_3954) - 4291395..4292723 (-) 1329 WP_005174384.1 type II toxin-antitoxin system HipA family toxin -
  CH47_RS20005 (CH47_3955) - 4292725..4293024 (-) 300 WP_005174382.1 helix-turn-helix transcriptional regulator -
  CH47_RS20010 (CH47_3956) - 4293293..4293964 (+) 672 WP_005174380.1 glutathione S-transferase family protein -
  CH47_RS20015 (CH47_3957) - 4294440..4295807 (+) 1368 WP_005174378.1 NCS2 family permease -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 19172.17 Da        Isoelectric Point: 4.9567

>NTDB_id=128975 CH47_RS19995 WP_005174387.1 4290779..4291330(+) (ssb) [Yersinia enterocolitica strain WA]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGASQDGGAQGGWGQPQQPQGGNQFSGGQQASRPAQ
SAPAAQPQGGNEPPMDFDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=128975 CH47_RS19995 WP_005174387.1 4290779..4291330(+) (ssb) [Yersinia enterocolitica strain WA]
ATGGCCAGCAGAGGCGTAAACAAAGTGATTTTGGTCGGGAATTTGGGCCAAGACCCGGAAGTCCGCTACATGCCGAATGG
CGGCGCTGTTGCCAATATCACCCTGGCCACTTCCGAAAGCTGGCGTGATAAAGCAACCGGCGAGCAGAAAGAAAAGACGG
AATGGCATCGGGTGGTGTTGTTCGGCAAACTAGCAGAAGTTGCTGGTGAATATTTGCGCAAAGGCTCTCAGGTCTATATC
GAAGGCGCATTGCAAACCCGTAAATGGACAGATCAGGCTGGTGTTGAGAAATATACCACTGAAGTTGTGGTTAACGTGGG
TGGCACCATGCAAATGCTGGGTGGCCGTCAAGGCGGTGGTGCTCCGGCGGGTGGTGGTGCATCACAAGACGGTGGCGCAC
AAGGCGGTTGGGGCCAACCTCAGCAGCCACAAGGTGGCAACCAGTTCAGCGGTGGTCAGCAGGCTTCACGGCCGGCTCAG
TCAGCGCCAGCAGCACAACCACAAGGCGGCAATGAGCCACCAATGGATTTTGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.727

100

0.743
  ssb Glaesserella parasuis strain SC1401

55.959

100

0.59
  ssb Neisseria meningitidis MC58

46.409

98.907

0.459
  ssb Neisseria gonorrhoeae MS11

45.856

98.907

0.454

Multiple sequence alignment