Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PSTEL_RS25810 Genome accession   NZ_CP009286
Coordinates   5642840..5643334 (-) Length   164 a.a.
NCBI ID   WP_038699821.1    Uniprot ID   A0A089M198
Organism   Paenibacillus stellifer strain DSM 14472     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5637840..5648334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSTEL_RS25790 (PSTEL_26800) - 5638115..5638540 (-) 426 WP_038699813.1 CBS domain-containing protein -
  PSTEL_RS25795 (PSTEL_26805) - 5638687..5639715 (-) 1029 WP_038699815.1 LCP family protein -
  PSTEL_RS25800 (PSTEL_26810) - 5640125..5642044 (-) 1920 WP_038699817.1 DNA mismatch repair protein MutS -
  PSTEL_RS25805 (PSTEL_26820) rpsR 5642546..5642818 (-) 273 WP_038699819.1 30S ribosomal protein S18 -
  PSTEL_RS25810 (PSTEL_26825) ssbA 5642840..5643334 (-) 495 WP_038699821.1 single-stranded DNA-binding protein Machinery gene
  PSTEL_RS25815 (PSTEL_26830) rpsF 5643387..5643674 (-) 288 WP_038699823.1 30S ribosomal protein S6 -
  PSTEL_RS25820 (PSTEL_26835) - 5643886..5644083 (+) 198 WP_038699824.1 YjzC family protein -
  PSTEL_RS25830 (PSTEL_26845) - 5644563..5644784 (-) 222 WP_038699826.1 DUF951 domain-containing protein -
  PSTEL_RS25835 - 5644774..5645724 (-) 951 WP_245625223.1 mechanosensitive ion channel family protein -
  PSTEL_RS25840 (PSTEL_26855) - 5645847..5646113 (-) 267 WP_038699828.1 DUF3343 domain-containing protein -
  PSTEL_RS25845 (PSTEL_26860) yyaC 5646264..5646836 (+) 573 WP_245625039.1 spore protease YyaC -
  PSTEL_RS25850 (PSTEL_26865) - 5646808..5647308 (-) 501 WP_038699832.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18010.86 Da        Isoelectric Point: 5.0001

>NTDB_id=128239 PSTEL_RS25810 WP_038699821.1 5642840..5643334(-) (ssbA) [Paenibacillus stellifer strain DSM 14472]
MLNRVILIGRLTRDPELRYTPQGVAVTQFTLAVDRPFTSQGGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESTQNREGGNASGGGSMPEPPSYGGGRGNSNGNGGFSRNNNQDPFSGDGKPIDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=128239 PSTEL_RS25810 WP_038699821.1 5642840..5643334(-) (ssbA) [Paenibacillus stellifer strain DSM 14472]
ATGTTGAACCGTGTCATCCTGATCGGCCGACTGACCCGTGATCCTGAGCTGCGTTATACGCCTCAAGGCGTTGCCGTAAC
CCAGTTTACGCTTGCCGTAGACCGACCTTTTACAAGCCAAGGCGGCGAACGTGAAGCGGATTTCATTCCGGTCGTTACTT
GGAGACAGCTGGCAGAGACCTGTGCCAATTATTTGCGCAAGGGCCGGCTGACGGCGGTAGAGGGACGCATACAAGTCCGG
AATTACGAGAATAACGAAGGCAAGCGTGTATACGTAACCGAAGTTATTGCGGATAATGTCCGGTTCCTGGAATCCACCCA
GAACCGTGAAGGCGGCAACGCATCCGGCGGTGGCTCCATGCCTGAACCTCCATCGTACGGCGGTGGACGCGGAAACAGCA
ACGGAAACGGCGGTTTCTCGCGCAACAATAATCAGGATCCCTTTTCGGGCGACGGTAAGCCGATTGATATATCGGACGAT
GATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A089M198

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.897

100

0.604
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.524

Multiple sequence alignment