Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   R50912_RS23335 Genome accession   NZ_CP009282
Coordinates   5503393..5505150 (+) Length   585 a.a.
NCBI ID   WP_042238256.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL R5-0912     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5498393..5510150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R50912_RS23315 (R50912_24235) - 5498744..5499850 (-) 1107 WP_042238249.1 AI-2E family transporter -
  R50912_RS23320 (R50912_24240) - 5500028..5500699 (+) 672 WP_042238251.1 response regulator transcription factor -
  R50912_RS23325 (R50912_24245) - 5500696..5501766 (+) 1071 WP_197072965.1 HAMP domain-containing sensor histidine kinase -
  R50912_RS23330 (R50912_24250) - 5501840..5502904 (-) 1065 WP_042238254.1 suppressor of fused domain protein -
  R50912_RS23335 (R50912_24255) rcrP 5503393..5505150 (+) 1758 WP_042238256.1 ABC transporter ATP-binding protein Regulator
  R50912_RS23340 (R50912_24260) rcrQ 5505150..5506916 (+) 1767 WP_197072966.1 ABC transporter ATP-binding protein Regulator
  R50912_RS23345 (R50912_24265) - 5507059..5507622 (-) 564 WP_042238258.1 5'-nucleotidase -
  R50912_RS35235 - 5507832..5507978 (-) 147 WP_144026097.1 lmo0937 family membrane protein -
  R50912_RS23350 - 5508144..5508590 (-) 447 Protein_4654 carbohydrate ABC transporter permease -
  R50912_RS36015 - 5508491..5508853 (-) 363 WP_231637939.1 hypothetical protein -
  R50912_RS23360 (R50912_24285) - 5508900..5509295 (+) 396 WP_197072967.1 cache domain-containing protein -
  R50912_RS23365 (R50912_24290) - 5509328..5509765 (+) 438 WP_042238261.1 hypothetical protein -
  R50912_RS35240 - 5509762..5509932 (+) 171 WP_156123281.1 hypothetical protein -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64163.63 Da        Isoelectric Point: 6.8629

>NTDB_id=128093 R50912_RS23335 WP_042238256.1 5503393..5505150(+) (rcrP) [Paenibacillus sp. FSL R5-0912]
MLKLLKNLEPKEWFLFGISLMFIIAQVWLDLELPDYMSDITRLIQTPGSQMSEILTAGAWMLLCALGSLATSIVVAGIAA
RIAADLSARLRANLFDKVQSFSMEEISNFSTASLITRSTNDITQVQMLIVIGLQLLVKAPILAVWAILKITGKSWQWTLA
TGASVGLLVLIVAVCITLVLPKFKKLQQLTDNLNRVSRENLNGLRVIRAYNAEKYQEGKFASANNELTRTNLFANNVMTT
LMPSISLIMSGLSLSIYWIGAVIIQAADGTAKMGLFSDMIVFSSYAIQVVMAFMMLIMIFILLPRAQVSAKRINEVLETV
PSLKNGSVTHFPVKRVDELEFRGVSFKYPDAEDYVLENISFTAKQGETVAFIGSTGCGKSTLVNLIPRFYDATEGEVLVN
GINVKEYDQQALRNKMGYVSQKAVLFGGTVTSNIAFGENGAGQVLSSDIVDAVYTSQSSEFVEKLEGSYDAHIAQGGSNL
SGGQKQRLSIARAIARRPEILIFDDSFSALDYKTDRKLRSELKKVASASTMLIVAQRIGTIKDADKIIVLEAGQIAGMGT
HDELMHTCSVYQEIAYSQLTKEELA

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=128093 R50912_RS23335 WP_042238256.1 5503393..5505150(+) (rcrP) [Paenibacillus sp. FSL R5-0912]
ATGTTGAAATTACTGAAGAACCTGGAGCCCAAAGAATGGTTCTTATTCGGCATCAGCCTCATGTTCATTATCGCGCAGGT
CTGGCTGGATCTGGAGCTGCCTGACTACATGAGTGATATTACCCGGCTGATCCAGACCCCGGGCAGCCAAATGAGTGAGA
TCCTGACCGCCGGAGCCTGGATGCTGCTCTGTGCACTCGGCAGTCTGGCCACCTCGATTGTCGTGGCAGGGATTGCCGCC
AGAATCGCGGCCGACCTGTCAGCCAGATTACGCGCTAATTTGTTTGATAAGGTGCAGTCTTTCTCAATGGAGGAGATCAG
CAACTTCTCCACCGCCAGCCTGATTACCCGGTCCACGAATGATATCACCCAGGTGCAGATGCTGATTGTCATCGGCTTGC
AATTGCTGGTCAAAGCACCCATCCTTGCCGTATGGGCGATCCTCAAGATTACGGGAAAAAGCTGGCAGTGGACGCTGGCG
ACCGGCGCCTCTGTTGGGCTGCTGGTGCTGATTGTCGCCGTCTGCATCACTCTCGTTCTTCCTAAATTCAAGAAACTGCA
GCAGTTAACCGACAATCTGAACCGTGTCTCCAGAGAGAATCTGAACGGTCTGCGGGTCATCCGGGCTTACAATGCCGAGA
AATACCAGGAAGGGAAATTTGCCTCCGCCAACAACGAGCTAACCCGCACCAATTTGTTTGCCAACAATGTAATGACAACG
CTGATGCCGAGTATTTCCCTGATTATGAGCGGACTCAGCCTCTCCATCTATTGGATTGGTGCTGTAATTATTCAAGCGGC
TGACGGCACCGCCAAGATGGGCTTGTTCTCAGATATGATTGTCTTCTCATCGTACGCGATACAGGTGGTTATGGCCTTCA
TGATGCTGATCATGATCTTCATTCTGCTGCCCCGCGCCCAGGTATCGGCCAAACGTATTAATGAGGTGCTGGAAACCGTG
CCTAGCCTGAAGAACGGATCAGTTACTCATTTCCCTGTGAAGCGTGTGGATGAGCTTGAATTCAGAGGGGTTAGCTTCAA
ATATCCGGACGCAGAGGATTATGTGCTGGAGAACATCAGCTTCACGGCGAAGCAGGGGGAGACGGTTGCTTTTATCGGCT
CAACAGGCTGCGGCAAGAGTACGCTTGTTAATCTCATTCCCCGTTTCTATGATGCTACCGAAGGCGAAGTGCTCGTGAAT
GGCATCAATGTCAAAGAATACGACCAGCAGGCGCTGCGGAATAAAATGGGCTATGTCTCCCAGAAGGCGGTACTGTTCGG
CGGAACGGTAACTTCGAATATTGCTTTTGGCGAGAATGGTGCCGGTCAGGTGCTCAGCTCCGATATTGTAGATGCGGTTT
ACACGTCCCAATCCTCTGAATTTGTGGAAAAGCTGGAGGGCAGCTACGATGCCCACATCGCCCAAGGGGGCTCCAATCTG
TCCGGCGGACAGAAGCAGCGGCTCTCGATTGCCAGAGCAATTGCCCGGCGCCCGGAAATTCTGATCTTCGATGATTCGTT
CTCGGCGCTTGACTATAAGACGGACCGCAAGCTGCGCAGCGAGTTGAAGAAGGTTGCTTCTGCATCCACGATGCTGATCG
TTGCCCAGCGCATTGGTACGATTAAAGACGCCGACAAAATCATCGTACTGGAAGCCGGACAAATTGCCGGAATGGGCACG
CATGACGAATTAATGCACACCTGCAGCGTCTATCAGGAAATTGCTTACTCACAGCTGACCAAGGAGGAGCTTGCCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-292)

ABC transporter (ABC_tran)

(356-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

51.174

100

0.521

Multiple sequence alignment