Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   R50912_RS23340 Genome accession   NZ_CP009282
Coordinates   5505150..5506916 (+) Length   588 a.a.
NCBI ID   WP_197072966.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL R5-0912     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5500150..5511916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R50912_RS23325 (R50912_24245) - 5500696..5501766 (+) 1071 WP_197072965.1 HAMP domain-containing sensor histidine kinase -
  R50912_RS23330 (R50912_24250) - 5501840..5502904 (-) 1065 WP_042238254.1 suppressor of fused domain protein -
  R50912_RS23335 (R50912_24255) rcrP 5503393..5505150 (+) 1758 WP_042238256.1 ABC transporter ATP-binding protein Regulator
  R50912_RS23340 (R50912_24260) rcrQ 5505150..5506916 (+) 1767 WP_197072966.1 ABC transporter ATP-binding protein Regulator
  R50912_RS23345 (R50912_24265) - 5507059..5507622 (-) 564 WP_042238258.1 5'-nucleotidase -
  R50912_RS35235 - 5507832..5507978 (-) 147 WP_144026097.1 lmo0937 family membrane protein -
  R50912_RS23350 - 5508144..5508590 (-) 447 Protein_4654 carbohydrate ABC transporter permease -
  R50912_RS36015 - 5508491..5508853 (-) 363 WP_231637939.1 hypothetical protein -
  R50912_RS23360 (R50912_24285) - 5508900..5509295 (+) 396 WP_197072967.1 cache domain-containing protein -
  R50912_RS23365 (R50912_24290) - 5509328..5509765 (+) 438 WP_042238261.1 hypothetical protein -
  R50912_RS35240 - 5509762..5509932 (+) 171 WP_156123281.1 hypothetical protein -
  R50912_RS23370 (R50912_24300) - 5509934..5510443 (+) 510 WP_042238263.1 response regulator -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 64064.28 Da        Isoelectric Point: 6.6131

>NTDB_id=128094 R50912_RS23340 WP_197072966.1 5505150..5506916(+) (rcrQ) [Paenibacillus sp. FSL R5-0912]
MKMKTKTKGQNTWSKLLRYCRKYVPVIIIALICAAAGTVLTLLGPDMLSEITDKITAGLAGGIDMDGIAAIGITLVVIYA
ISAVLSLSQGLIMSNITQKVSKKLRTDLAHKMNRLPISYYNKSATGDILSRVTNDVDTIGQAMNQSIGTVVTAIAMFIGS
ILMMLRTNVIMTLTAIVATIIGFGLMAVIMKKSQKYFASQQEFLGKINGHVEEVYTGHNVVKAYNGEAQMRSTFQELNQG
LKNSAFKAQFLSGLMPPLMGFIGNLGFVAVCVVGAVLALDGTISFGVIVAFIMYVRYFTQPLSQIAQAAQNLQSASAAGG
RVFEFLEEAELEDESRKENTLATAAGKVSFDQVKFAYENSGNLVIKNFSADVKPGQKVAIVGPTGAGKTTLVNLLIRFNE
LTGGEIYIDDTPISSLTRENIHDLFCMVLQETWLFEGTIRENLIYNQQNITDEKLVEACKAVGLHRFIQSLSDGYDTVLN
DKVNLSAGQKQQLTIARAMLKDAPMLILDEATSSVDTRTELLIQQAMDQLMEGRTSFVIAHRLSTIKNADVILVLKDGDI
LESGSHTELLAKNGFYAELYNSQFEQAS

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=128094 R50912_RS23340 WP_197072966.1 5505150..5506916(+) (rcrQ) [Paenibacillus sp. FSL R5-0912]
ATGAAGATGAAAACCAAGACCAAAGGACAGAATACCTGGAGCAAGCTGCTCCGTTACTGCCGGAAATACGTTCCGGTGAT
CATCATTGCGCTGATCTGCGCGGCGGCGGGAACCGTGCTCACCCTGCTCGGTCCGGATATGCTCTCCGAGATTACGGACA
AAATCACTGCCGGTCTCGCAGGCGGGATCGATATGGACGGCATTGCTGCCATCGGCATCACCCTCGTCGTGATTTACGCC
ATCAGTGCGGTATTATCGCTCTCCCAGGGCCTGATCATGTCGAATATTACCCAGAAGGTCTCCAAGAAATTAAGAACCGA
TCTGGCTCATAAGATGAACCGGCTTCCAATCTCCTACTATAATAAGTCAGCCACAGGGGATATCCTCTCCCGGGTAACGA
ATGATGTGGATACCATCGGCCAGGCGATGAATCAGAGCATAGGTACAGTGGTAACCGCCATAGCCATGTTCATCGGTTCA
ATCCTCATGATGCTCCGGACCAATGTAATTATGACCCTTACCGCTATCGTGGCAACAATCATCGGCTTCGGCCTGATGGC
GGTTATTATGAAGAAATCGCAGAAGTATTTTGCCAGCCAGCAGGAATTCTTGGGCAAAATCAACGGTCATGTTGAGGAAG
TCTATACCGGACATAATGTTGTAAAAGCCTATAACGGTGAAGCGCAGATGCGCAGCACCTTCCAGGAACTGAATCAGGGG
CTGAAGAACAGCGCCTTCAAAGCGCAATTCCTCTCCGGACTGATGCCGCCGCTAATGGGCTTTATCGGTAATCTTGGTTT
CGTTGCCGTCTGTGTCGTTGGTGCTGTACTGGCCTTAGATGGAACTATTTCCTTCGGGGTTATCGTCGCCTTCATTATGT
ATGTACGTTACTTCACCCAGCCGTTATCCCAGATCGCCCAGGCCGCGCAGAACCTGCAATCGGCATCGGCCGCAGGCGGA
CGTGTGTTTGAATTCCTCGAAGAAGCAGAATTGGAAGACGAGAGCCGCAAAGAGAACACACTGGCAACTGCGGCAGGTAA
AGTAAGCTTTGACCAGGTGAAATTCGCTTATGAGAATTCCGGGAACCTGGTGATCAAGAACTTCTCGGCCGATGTGAAGC
CAGGGCAAAAGGTGGCCATTGTCGGACCGACCGGCGCAGGCAAAACCACGCTCGTCAATCTGCTCATCCGCTTCAACGAG
CTGACCGGCGGAGAAATCTACATCGATGACACACCGATCAGTAGTCTGACGAGGGAGAACATCCACGATTTGTTCTGCAT
GGTGCTGCAGGAAACCTGGCTGTTTGAAGGCACAATCAGGGAGAACCTGATCTACAATCAGCAGAATATCACGGACGAGA
AGCTCGTAGAAGCCTGCAAGGCTGTTGGGCTGCACCGCTTCATTCAGAGCCTTAGCGACGGATATGATACCGTCCTGAAC
GATAAGGTCAACCTGTCCGCCGGACAAAAGCAGCAGCTGACCATTGCCCGTGCGATGCTGAAGGATGCGCCGATGCTCAT
TCTTGACGAAGCTACAAGCTCCGTGGATACCCGGACTGAGCTGCTGATCCAGCAGGCGATGGATCAGCTGATGGAGGGCA
GAACTTCCTTCGTCATCGCCCACCGGCTGTCCACAATCAAGAATGCCGATGTGATTCTCGTCCTGAAGGACGGCGATATC
CTGGAAAGCGGCAGTCATACAGAATTGCTGGCGAAGAACGGATTCTACGCGGAGCTGTACAACAGCCAGTTTGAGCAGGC
TTCCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(366-513)

ABC transporter transmembrane region (ABC_membrane)

(27-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.938

98.81

0.553

Multiple sequence alignment