Detailed information NTG0127809

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: VV93_RS12340
• Genome accession: NZ_CP009261
• Coordinates: 2690120..2693509 (+)
• Length: 1129 a.a.
• NCBI ID: WP_039554567.1
• Uniprot ID: -
• Organism: Vibrio vulnificus strain 93U204
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2685120..2698509

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VV93_RS12320 (VV93_v1c24420)	erpA	2685518..2685859 (-)	342	WP_011079598.1	iron-sulfur cluster insertion protein ErpA	-
VV93_RS12325 (VV93_v1c24430)	hemL	2686147..2687442 (+)	1296	WP_039555292.1	glutamate-1-semialdehyde 2,1-aminomutase	-
VV93_RS12330 (VV93_v1c24440)	-	2687692..2688777 (+)	1086	WP_013571166.1	AI-2E family transporter	-
VV93_RS12335 (VV93_v1c24450)	rsmC	2688851..2689873 (+)	1023	WP_039554565.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
VV93_RS12340 (VV93_v1c24460)	chiS	2690120..2693509 (+)	3390	WP_039554567.1	response regulator	Regulator
VV93_RS12345 (VV93_v1c24470)	-	2694450..2696123 (+)	1674	WP_011079593.1	ABC transporter substrate-binding protein	-
VV93_RS12350 (VV93_v1c24480)	-	2696292..2697278 (+)	987	WP_011079592.1	ABC transporter permease	-
VV93_RS12355 (VV93_v1c24490)	-	2697281..2698306 (+)	1026	WP_011079591.1	ABC transporter permease	-

Sequence

Protein

• Length: 1129 a.a.
• Molecular weight: 127449.39 Da
• Isoelectric Point: 5.8916

>NTDB_id=127809 VV93_RS12340 WP_039554567.1 2690120..2693509(+) (chiS) [Vibrio vulnificus strain 93U204]
MFKFYRKQKFKRLQSTLMTAFLVLSITPLTITAIFFLQSHSKDLQEQSTSHLLSVRDTKQQQILDYFQAQETEVMGFVRS
ELAYASGGRFYGLVNAFKSLGVDMEQARENAQQRYIQGSGDQIKTSILPESSSFVGSERYRLLHKRYHWAYLELLKRSDF
DDILLVDLDGNVTYSIYKNENFGTNLIEGPFKESMLGKSFRQLANDVSEKRKQNEDYTPVYISDFSVEDGKQVAWLGAPI
IQQGYLHSYAMFRLPNNGITKLIADINKDAAIHTLLVGSDHLPRTMTTKQTDIESSIEVVDKALAGLTDVGTYVNSSGEA
TIAAYAPISFKGQTWALVVQLPEKEAFARIHQLEKLFVIAMLIAIVLVFISSHYLSNFITSPLLKLTWAAERVSAGDLDE
NMINTERKDEIGRLAISFERMQRSIRDKIQLIKTQNAELEKNLQLIQKQNDELQLADKLKDEFLATTSHELRTPLHGMIG
IAETLISGANGPLPSNQRYQLDIIIKSGQRLATLVDDLLDYHKMRYGSLDIQKSAVNLASATRLVLELSHHLLGNKTLRI
INQVSNDVAPVSADPQRLEQVLYNLIGNAIKYTTEGKIVISANVVDDKVRVQVVDTGQGIPAEQLEHIFEPLIQAGRDSG
RYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLASADEISATEVMQNQHHFQAPDSNELISLDNSSLPENP
NGPLLIVADDEPVNLRVLESFLRIEGYRVQTASDGPDTLELIEHEKPALLLLDIMMPGMSGYQVCHQLRQQYDMAELPII
MLTALSQSEDRVRGFEAGANDYLTKPFNKQELAARIKAHLMASKAEARRLENNRLEAELRQRAMVEASLLETQGRLLEQL
ESAPEAIICIREDKRIRFANDAACKLFKRSLEQLKRSNAEELIAPKYLTVKQQHYCGNIDIYVDDVRQHIETDILKLPEG
SGLDAMFIFNVGGGAAASRVHNLETAVEVLSSYAFDGDKERLQSLKELGGEFTRLADKALGTNKNKQELMREVLVDLMTH
ALDYWESVTGENKFTFAEQSGLWRVYLDRSTLQTRTLDKYMRIETLPKTPRWRTVLSSIEYILDHCKEQSPERTYIEMQR
DKLQRLLTS

Nucleotide

• Length: 3390 bp

>NTDB_id=127809 VV93_RS12340 WP_039554567.1 2690120..2693509(+) (chiS) [Vibrio vulnificus strain 93U204]
ATGTTTAAGTTTTATCGCAAACAGAAGTTTAAACGCCTTCAAAGCACTCTGATGACTGCGTTTTTGGTGCTGAGTATCAC
GCCATTAACCATCACAGCGATTTTCTTTTTGCAATCACACAGTAAAGATCTCCAAGAACAGAGCACTTCTCACCTGCTTT
CTGTTCGAGACACCAAACAACAACAGATCCTGGATTATTTCCAAGCACAAGAAACGGAAGTGATGGGATTTGTTCGTTCA
GAGTTGGCTTACGCGAGTGGTGGCCGATTTTACGGGCTTGTCAACGCCTTCAAAAGCTTAGGCGTGGATATGGAACAGGC
TCGAGAAAACGCTCAACAGCGCTATATTCAGGGGTCTGGCGATCAAATAAAAACGTCGATTTTACCGGAATCCAGCTCTT
TTGTTGGTAGTGAACGCTACCGTTTACTGCATAAGCGCTATCACTGGGCCTATTTGGAGCTTTTGAAGCGCTCCGATTTT
GACGATATTTTGTTGGTGGATCTCGATGGCAACGTCACCTACTCCATCTACAAAAATGAAAACTTTGGCACAAACTTAAT
TGAAGGGCCTTTTAAAGAGAGCATGCTCGGCAAAAGCTTCCGTCAATTGGCCAATGACGTCAGCGAAAAACGCAAGCAAA
ACGAAGACTATACCCCCGTCTATATATCCGACTTCTCGGTTGAAGATGGCAAACAAGTCGCTTGGTTGGGTGCACCGATC
ATCCAGCAAGGCTATCTGCACAGCTACGCCATGTTCAGGCTACCCAACAATGGCATCACTAAACTGATTGCAGACATCAA
TAAAGATGCAGCTATCCACACTTTGCTGGTTGGAAGTGACCACTTACCTCGCACGATGACCACAAAGCAAACCGATATCG
AAAGCAGTATTGAAGTGGTCGATAAGGCACTCGCGGGACTGACGGATGTGGGGACTTATGTCAACAGCAGCGGTGAGGCG
ACCATCGCCGCCTATGCGCCAATTTCGTTCAAGGGTCAAACCTGGGCTTTAGTGGTTCAGTTGCCGGAGAAAGAAGCGTT
TGCACGCATTCATCAGTTAGAAAAACTGTTCGTCATCGCTATGTTGATTGCGATCGTGCTGGTGTTTATCTCATCTCACT
ACCTATCGAATTTCATCACCTCACCACTACTCAAACTCACTTGGGCTGCAGAGCGCGTTTCTGCAGGTGATCTCGATGAA
AACATGATTAATACCGAGCGCAAAGACGAAATTGGCCGTTTAGCGATCAGTTTTGAACGAATGCAACGCTCTATTCGCGA
TAAAATTCAGCTCATTAAAACGCAAAATGCGGAGCTAGAGAAAAATCTACAACTGATTCAAAAGCAAAATGACGAATTGC
AATTGGCCGATAAGCTCAAAGATGAATTTTTGGCGACGACCTCTCATGAGCTACGCACTCCACTGCATGGCATGATTGGT
ATTGCAGAAACCCTCATCTCAGGGGCAAACGGCCCACTGCCCTCTAACCAGCGCTATCAACTGGACATTATTATTAAGAG
TGGCCAGCGTTTAGCTACGCTTGTGGATGACTTGCTTGACTACCACAAAATGCGCTATGGCAGTTTGGATATTCAAAAGT
CCGCCGTCAATTTGGCCAGTGCAACTCGACTGGTATTAGAGCTCTCTCACCATTTATTGGGCAACAAAACTCTGCGCATC
ATTAATCAGGTTTCTAACGATGTTGCGCCAGTATCTGCCGATCCACAGCGATTAGAACAGGTGCTGTATAACCTTATTGG
CAACGCGATCAAATACACCACTGAAGGGAAAATCGTCATTTCCGCCAATGTGGTTGACGATAAAGTTCGAGTGCAAGTCG
TCGATACCGGCCAAGGCATTCCCGCAGAACAGTTGGAGCATATTTTCGAACCGCTTATTCAAGCTGGTCGCGACTCTGGT
CGTTATCGCCAAGGTGCCGGTCTGGGACTTTCCATTAGCCGTCAGCTTATCGAGTTAATGGGAGGATCGCTCTACGTCAG
CAGTCAACCTATGGTTGGCACCACCTTTAGCTTCACCTTGCCATTGGCCAGCGCAGACGAAATCAGTGCCACGGAAGTCA
TGCAAAATCAACATCACTTCCAAGCGCCAGATAGCAATGAATTGATCTCATTAGATAATTCATCACTGCCAGAAAATCCC
AATGGTCCGCTACTGATTGTGGCCGATGATGAACCCGTCAACTTACGCGTGCTTGAAAGTTTCCTACGCATCGAAGGGTA
CCGAGTGCAAACGGCCTCAGATGGCCCAGACACTCTCGAACTCATTGAACATGAAAAACCCGCCTTGCTGTTGCTCGACA
TCATGATGCCGGGCATGAGCGGTTATCAAGTTTGCCATCAACTCCGACAGCAATACGACATGGCAGAATTGCCTATTATC
ATGCTAACGGCGTTGAGTCAGAGCGAAGATCGCGTGCGAGGATTCGAAGCTGGAGCCAATGATTACTTAACCAAACCATT
TAATAAGCAAGAGCTTGCGGCCCGAATTAAAGCACATTTAATGGCAAGTAAAGCAGAAGCTCGTCGCTTGGAAAACAATC
GCCTTGAAGCAGAGCTTCGCCAACGTGCAATGGTGGAAGCAAGCTTACTGGAAACACAAGGGCGTTTATTAGAACAATTG
GAATCGGCCCCAGAAGCCATTATCTGTATTCGTGAAGATAAGCGTATTCGCTTTGCCAATGACGCGGCCTGTAAACTGTT
CAAACGCAGCTTAGAGCAGCTCAAGCGCTCAAACGCAGAAGAACTTATTGCACCCAAATATTTAACCGTCAAACAGCAGC
ACTATTGCGGCAATATCGATATCTATGTCGACGATGTTCGACAGCATATTGAAACGGATATCCTTAAACTACCAGAAGGG
TCTGGCCTTGATGCGATGTTTATCTTTAATGTCGGGGGAGGCGCAGCTGCTTCTCGTGTGCACAACCTAGAAACCGCCGT
GGAAGTCCTTTCAAGCTATGCCTTTGATGGTGACAAAGAGCGCTTACAGAGCCTCAAAGAGCTAGGGGGAGAATTTACTC
GCCTGGCCGACAAAGCGCTGGGTACCAATAAGAATAAGCAAGAGCTGATGCGTGAAGTCCTCGTGGATTTGATGACGCAT
GCACTCGATTATTGGGAGTCAGTGACAGGTGAAAACAAATTTACCTTTGCTGAACAAAGTGGTTTATGGCGTGTTTATCT
CGACCGCAGCACGCTACAAACTCGCACACTTGATAAATACATGCGAATTGAAACCTTGCCAAAAACGCCGCGCTGGAGAA
CCGTGTTGAGTTCTATTGAGTACATTCTGGACCACTGTAAAGAACAAAGCCCTGAGCGTACTTACATTGAGATGCAGCGA
GATAAATTACAACGCCTGCTCACCAGCTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (726-837)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

• PAS fold (PAS) (877-926)

• HAMP domain (HAMP) (375-427)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	77.148	100	0.771