Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   NJ8700_RS10905 Genome accession   NZ_CP009230
Coordinates   2288883..2289209 (+) Length   108 a.a.
NCBI ID   WP_005701687.1    Uniprot ID   A0AAP7GZ73
Organism   Aggregatibacter aphrophilus NJ8700     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2283883..2294209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NJ8700_RS10890 (NJ8700_11125) ileS 2284249..2287071 (+) 2823 WP_012771988.1 isoleucine--tRNA ligase -
  NJ8700_RS10895 (NJ8700_11130) lspA 2287159..2287653 (+) 495 WP_005701689.1 signal peptidase II -
  NJ8700_RS10900 (NJ8700_11135) ispH 2287653..2288597 (+) 945 WP_012771989.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  NJ8700_RS10905 (NJ8700_11140) comE1/comEA 2288883..2289209 (+) 327 WP_005701687.1 helix-hairpin-helix domain-containing protein Machinery gene
  NJ8700_RS10910 (NJ8700_11145) rdgB 2289319..2289918 (+) 600 WP_005701686.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  NJ8700_RS10915 (NJ8700_11150) - 2289974..2290297 (+) 324 WP_005701684.1 YbjQ family protein -
  NJ8700_RS10920 (NJ8700_11155) hemW 2290311..2291465 (+) 1155 WP_005701682.1 radical SAM family heme chaperone HemW -
  NJ8700_RS10925 (NJ8700_11160) rpiA 2291578..2292234 (+) 657 WP_005701681.1 ribose-5-phosphate isomerase RpiA -
  NJ8700_RS10930 (NJ8700_11165) serA 2292258..2293490 (+) 1233 WP_005701680.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 11402.14 Da        Isoelectric Point: 9.6912

>NTDB_id=127420 NJ8700_RS10905 WP_005701687.1 2288883..2289209(+) (comE1/comEA) [Aggregatibacter aphrophilus NJ8700]
MKAMKHLLAAAFVFGSVFAGSAVAAEKTAEPVQLEQPAVQNSVGDKVNINTATAAEIQKALVGIGAKKAEAVVQYREKHG
NFSAVEQLLEVQGIGKATLEKNRDRIAL

Nucleotide


Download         Length: 327 bp        

>NTDB_id=127420 NJ8700_RS10905 WP_005701687.1 2288883..2289209(+) (comE1/comEA) [Aggregatibacter aphrophilus NJ8700]
ATGAAAGCAATGAAGCATCTTTTAGCCGCCGCTTTTGTGTTCGGTTCGGTGTTTGCGGGTTCTGCGGTTGCCGCAGAAAA
AACGGCTGAGCCGGTACAACTTGAACAACCGGCGGTGCAAAACAGTGTCGGTGATAAAGTGAATATTAACACCGCTACAG
CAGCAGAAATTCAAAAAGCGCTTGTAGGCATTGGTGCGAAAAAAGCGGAGGCGGTTGTGCAATATCGTGAAAAACACGGT
AATTTCAGCGCAGTGGAACAATTATTGGAAGTACAGGGGATTGGTAAAGCGACATTAGAAAAGAATCGCGATCGTATCGC
ATTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(45-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

61.947

100

0.648
  comEA/comE1 Glaesserella parasuis strain SC1401

54.867

100

0.574
  comEA Vibrio parahaemolyticus RIMD 2210633

42.857

97.222

0.417
  comEA Vibrio cholerae C6706

47.619

77.778

0.37
  comEA Vibrio cholerae strain A1552

47.619

77.778

0.37
  comEA Acinetobacter baylyi ADP1

52

69.444

0.361

Multiple sequence alignment