Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   NCDO2118_RS13510 Genome accession   NZ_CP009054
Coordinates   1132323..1132727 (-) Length   134 a.a.
NCBI ID   WP_226898158.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis NCDO 2118     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1127323..1137727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCDO2118_RS05655 (NCDO2118_1085) - 1127479..1129011 (+) 1533 WP_012897703.1 Nramp family divalent metal transporter -
  NCDO2118_RS05660 (NCDO2118_1086) - 1129113..1130081 (+) 969 WP_003130649.1 PhoH family protein -
  NCDO2118_RS05665 (NCDO2118_1087) - 1130139..1130618 (+) 480 WP_003130650.1 NUDIX hydrolase -
  NCDO2118_RS05670 (NCDO2118_1088) ybeY 1130770..1131258 (+) 489 WP_003130652.1 rRNA maturation RNase YbeY -
  NCDO2118_RS05675 (NCDO2118_1089) - 1131242..1131697 (+) 456 WP_003130653.1 diacylglycerol kinase family protein -
  NCDO2118_RS05680 (NCDO2118_1090) - 1131711..1132289 (+) 579 WP_012897704.1 nucleotidyltransferase family protein -
  NCDO2118_RS13510 comFC 1132323..1132727 (-) 405 WP_226898158.1 ComF family protein Machinery gene
  NCDO2118_RS05690 (NCDO2118_1092) comFA 1132970..1134292 (-) 1323 WP_012897706.1 DEAD/DEAH box helicase Machinery gene
  NCDO2118_RS05695 (NCDO2118_1093) - 1134349..1134978 (+) 630 WP_012897707.1 YigZ family protein -
  NCDO2118_RS05700 (NCDO2118_1094) - 1135112..1135609 (+) 498 WP_012897708.1 VanZ family protein -
  NCDO2118_RS05705 (NCDO2118_1095) - 1135657..1136676 (+) 1020 WP_012897709.1 DUF475 domain-containing protein -
  NCDO2118_RS05710 (NCDO2118_1096) - 1136786..1137538 (+) 753 WP_012897710.1 bifunctional metallophosphatase/5'-nucleotidase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15749.18 Da        Isoelectric Point: 9.8798

>NTDB_id=126461 NCDO2118_RS13510 WP_226898158.1 1132323..1132727(-) (comFC) [Lactococcus lactis subsp. lactis NCDO 2118]
MKDYFSQYKFVGDYRLYQIFEPYFKNISQKSPLVPIPISPKRLEERGFNQVTAFLQQENFIELLEKENSVKQSSLNRKER
LESPNPFRLKKGLKVPTKVILIDDIYTTGTTLYHASQILKEAGVHEIRSFSLCR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=126461 NCDO2118_RS13510 WP_226898158.1 1132323..1132727(-) (comFC) [Lactococcus lactis subsp. lactis NCDO 2118]
ATGAAAGATTATTTTAGCCAGTATAAATTTGTTGGAGATTATCGATTATACCAAATTTTTGAGCCCTATTTTAAAAATAT
TTCCCAAAAATCTCCTTTGGTTCCAATTCCTATTTCACCAAAAAGATTAGAGGAACGTGGTTTCAATCAAGTGACTGCTT
TTCTTCAACAAGAAAATTTTATTGAACTTCTTGAAAAAGAGAATTCGGTCAAACAATCTAGCCTTAATCGAAAAGAACGA
TTGGAAAGTCCAAATCCTTTTCGATTAAAAAAAGGGCTAAAAGTCCCTACAAAAGTTATATTAATTGACGATATTTATAC
AACAGGTACCACCTTATATCACGCATCACAAATTCTAAAAGAAGCTGGTGTTCATGAAATAAGGAGCTTTTCTCTCTGCC
GTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(91-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Lactococcus lactis subsp. cremoris KW2

67.91

100

0.679
  comFC/cflB Streptococcus mitis NCTC 12261

46.043

100

0.478
  comFC/cflB Streptococcus mitis SK321

46.043

100

0.478
  comFC/cflB Streptococcus pneumoniae Rx1

43.885

100

0.455
  comFC/cflB Streptococcus pneumoniae D39

43.885

100

0.455
  comFC/cflB Streptococcus pneumoniae R6

43.885

100

0.455
  comFC/cflB Streptococcus pneumoniae TIGR4

43.885

100

0.455
  comFC Bacillus subtilis subsp. subtilis str. 168

38.194

100

0.41
  comFC Latilactobacillus sakei subsp. sakei 23K

39.231

97.015

0.381

Multiple sequence alignment