Detailed information NTG0125223

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: HV98_RS33070
• Genome accession: NZ_CP008869
• Coordinates: 2258476..2259333 (+)
• Length: 285 a.a.
• NCBI ID: WP_003091164.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain W16407
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2253476..2264333

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HV98_RS10970 (HV98_17620)	lolD	2254360..2255043 (+)	684	WP_003091168.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
HV98_RS10975 (HV98_17615)	-	2255113..2256357 (+)	1245	WP_003113987.1	lipoprotein-releasing ABC transporter permease subunit	-
HV98_RS10980 (HV98_17610)	-	2256445..2256978 (-)	534	WP_003091165.1	DUF2062 domain-containing protein	-
HV98_RS33065	comA	2257109..2258467 (+)	1359	WP_237113580.1	ComEC/Rec2 family competence protein	Machinery gene
HV98_RS33070	comA	2258476..2259333 (+)	858	WP_003091164.1	ComEC/Rec2 family competence protein	Machinery gene
HV98_RS10990 (HV98_17600)	exbB	2259406..2260041 (+)	636	WP_003091163.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
HV98_RS10995 (HV98_17595)	-	2260038..2260478 (+)	441	WP_003091161.1	ExbD/TolR family protein	-
HV98_RS11000 (HV98_17590)	lpxK	2260478..2261476 (+)	999	WP_003091159.1	tetraacyldisaccharide 4'-kinase	-
HV98_RS11005 (HV98_17585)	-	2261514..2261699 (+)	186	WP_003091157.1	Trm112 family protein	-
HV98_RS11010 (HV98_17580)	kdsB	2261699..2262463 (+)	765	WP_003091155.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
HV98_RS11015 (HV98_17575)	-	2262463..2262927 (+)	465	WP_003106924.1	low molecular weight protein-tyrosine-phosphatase	-
HV98_RS11020 (HV98_17570)	murB	2262924..2263943 (+)	1020	WP_003106928.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 285 a.a.
• Molecular weight: 31161.35 Da
• Isoelectric Point: 7.5730

>NTDB_id=125223 HV98_RS33070 WP_003091164.1 2258476..2259333(+) (comA) [Pseudomonas aeruginosa strain W16407]
MLGALCWLAPAGLPLRALGAALLLPALLPSSPPVEWGRAEVRVLDVGQGLAVLVRTREHALLYDSGARQGAFDMGERVVV
PVLRSLDLRRLDGLLLSHADNDHAGGAPTVASRFPPGWLVSGEPARLPSPLFADSCDERSWSWDGVVFEQWAWAQAGDSN
DRSCVLRVEADGEVLLLTGDISRAAEHAWLARQADPRVDWLLAPHHGSRSSSGVAFVLRTRPRHVLVSRGWRNAFGHPHG
EVMERYARVAAQVHDTARDGALTFLLGSRGGARRERDSAHFWREK

Nucleotide

• Length: 858 bp

>NTDB_id=125223 HV98_RS33070 WP_003091164.1 2258476..2259333(+) (comA) [Pseudomonas aeruginosa strain W16407]
ATGCTCGGCGCGCTCTGCTGGCTGGCGCCGGCTGGCTTGCCGTTGCGTGCCCTCGGTGCCGCGTTGCTACTGCCGGCATT
GTTGCCGTCATCGCCGCCTGTCGAATGGGGGCGGGCGGAAGTGAGGGTGCTGGACGTCGGCCAGGGGCTGGCCGTGCTGG
TGCGTACCCGGGAGCATGCCTTGCTCTATGACAGCGGTGCGCGGCAGGGGGCGTTCGACATGGGCGAGCGGGTGGTGGTG
CCGGTGCTGCGCAGTCTGGACCTGCGGCGCCTGGACGGCCTGTTGCTGAGTCATGCCGACAACGACCATGCAGGCGGTGC
TCCTACGGTCGCTTCCCGATTCCCGCCGGGTTGGCTGGTCAGCGGCGAACCCGCGCGCCTGCCTTCGCCGTTGTTCGCGG
ACAGCTGCGACGAGCGGAGCTGGTCCTGGGATGGCGTGGTTTTCGAACAGTGGGCATGGGCGCAGGCCGGCGACAGCAAC
GACCGCTCCTGTGTGCTGAGGGTCGAGGCCGATGGCGAAGTCCTGCTGCTGACCGGGGACATCTCGCGTGCGGCCGAGCA
TGCCTGGCTGGCGCGACAGGCCGATCCCCGGGTCGACTGGTTGCTGGCGCCGCATCATGGCAGCCGCAGTTCCTCCGGAG
TCGCCTTCGTGTTGCGTACGCGACCTCGCCATGTGCTGGTCTCGCGAGGTTGGCGCAACGCCTTCGGCCATCCCCATGGC
GAAGTGATGGAGCGTTACGCGAGGGTCGCCGCGCAGGTCCACGACACGGCACGCGACGGTGCCCTGACGTTTCTCCTCGG
AAGCCGTGGCGGCGCACGCCGGGAGCGTGATTCGGCGCACTTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (45-211)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	55.439	100	0.554
comA	Neisseria gonorrhoeae MS11	37.868	95.439	0.361
comA	Ralstonia pseudosolanacearum GMI1000	41.532	87.018	0.361