Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   HV98_RS33065 Genome accession   NZ_CP008869
Coordinates   2257109..2258467 (+) Length   452 a.a.
NCBI ID   WP_237113580.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain W16407     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2252109..2263467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV98_RS10960 (HV98_17630) - 2252416..2253015 (-) 600 WP_003105196.1 PilZ domain-containing protein -
  HV98_RS10965 (HV98_17625) - 2253118..2254367 (+) 1250 Protein_2127 lipoprotein-releasing ABC transporter permease subunit -
  HV98_RS10970 (HV98_17620) lolD 2254360..2255043 (+) 684 WP_003091168.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  HV98_RS10975 (HV98_17615) - 2255113..2256357 (+) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -
  HV98_RS10980 (HV98_17610) - 2256445..2256978 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  HV98_RS33065 comA 2257109..2258467 (+) 1359 WP_237113580.1 ComEC/Rec2 family competence protein Machinery gene
  HV98_RS33070 comA 2258476..2259333 (+) 858 WP_003091164.1 ComEC/Rec2 family competence protein Machinery gene
  HV98_RS10990 (HV98_17600) exbB 2259406..2260041 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HV98_RS10995 (HV98_17595) - 2260038..2260478 (+) 441 WP_003091161.1 ExbD/TolR family protein -
  HV98_RS11000 (HV98_17590) lpxK 2260478..2261476 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  HV98_RS11005 (HV98_17585) - 2261514..2261699 (+) 186 WP_003091157.1 Trm112 family protein -
  HV98_RS11010 (HV98_17580) kdsB 2261699..2262463 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HV98_RS11015 (HV98_17575) - 2262463..2262927 (+) 465 WP_003106924.1 low molecular weight protein-tyrosine-phosphatase -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 49008.40 Da        Isoelectric Point: 11.3353

>NTDB_id=125222 HV98_RS33065 WP_237113580.1 2257109..2258467(+) (comA) [Pseudomonas aeruginosa strain W16407]
MRLGLPALAAGLLALRFLAELPSVGWLLGMAAAGLLLLFGRLYWLGLFLLGFAWACGSAQVALDGRLAAELDGRTLWLEG
RVVDLPASGEGVTRFRLEEVSAARGVLLPERLRLSWRGAPPLMGGERWRLAVTLKRPRGLVNAAGFDYEAWLLAQRVGAV
GTVKAGQRLQPASGLDAWRDAWRQRLLAVDAQGRGAALAALVLGDGSGLSAAEWRMFQDTGTVHLMVISGSHISLLAGML
YGLVAALHRLGCWPRRLPWLPCACALGLLGAWSYGLMAGFEVPVRRACLMVSLALVWRLRFRHLGLLAPLLGTLVLVLLV
EPLASLQAGFWLSFLAVALLLWLFAGRLGRWRWWAAWGRAQWGMALGLAMPLLALGLPLSLSGALANLLAVPWIELLVVP
RPWRGACCCGCPGWARGCFAPLAFRWTCCFVRLACWQAWPRPGSHPPQRPGA

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=125222 HV98_RS33065 WP_237113580.1 2257109..2258467(+) (comA) [Pseudomonas aeruginosa strain W16407]
ATGCGCCTGGGATTGCCAGCCCTCGCCGCGGGGCTGCTGGCCCTGCGCTTCCTGGCGGAATTGCCGTCGGTCGGCTGGCT
GCTGGGCATGGCCGCCGCCGGACTGTTGCTGCTGTTCGGCCGGCTGTACTGGCTGGGGTTGTTCCTGCTCGGGTTCGCCT
GGGCCTGCGGCTCGGCGCAAGTCGCCCTGGACGGACGCCTGGCCGCCGAGCTGGATGGTCGCACCCTTTGGCTGGAGGGG
CGTGTGGTCGATCTGCCGGCGAGCGGCGAGGGCGTCACGCGCTTCCGGCTGGAGGAGGTCAGCGCTGCGCGGGGCGTGCT
TCTTCCCGAGCGTCTGCGCCTGAGCTGGCGCGGCGCGCCGCCGCTGATGGGCGGCGAACGCTGGCGCCTGGCGGTGACCC
TGAAACGCCCCCGCGGCCTGGTGAACGCGGCGGGGTTCGACTACGAGGCCTGGTTGTTGGCGCAGCGGGTCGGTGCCGTG
GGCACGGTGAAGGCGGGCCAACGCCTGCAGCCGGCCAGCGGCCTGGATGCCTGGCGCGACGCCTGGCGCCAACGCCTGCT
GGCGGTCGACGCACAGGGGCGCGGCGCCGCCCTGGCGGCGCTGGTGCTGGGGGATGGCTCGGGATTGAGCGCGGCCGAGT
GGCGCATGTTCCAGGACACCGGCACCGTGCATCTGATGGTCATCTCCGGTTCGCATATCTCGTTGCTGGCGGGGATGCTC
TATGGCCTGGTGGCGGCCTTGCATCGCCTGGGCTGCTGGCCGCGGCGCCTGCCCTGGCTGCCCTGTGCCTGCGCCCTGGG
TTTGCTTGGTGCCTGGAGCTACGGGTTGATGGCGGGTTTCGAGGTCCCGGTACGGCGCGCCTGCCTGATGGTCAGCCTGG
CGCTGGTCTGGCGCCTGCGTTTCCGCCACCTGGGCTTGCTGGCCCCGCTGTTGGGAACGCTGGTGCTGGTCTTGCTGGTC
GAGCCGCTGGCCAGCCTGCAGGCGGGGTTCTGGCTGTCGTTCCTGGCGGTTGCCCTGCTGCTCTGGCTGTTCGCCGGGCG
CCTTGGGCGCTGGCGCTGGTGGGCGGCCTGGGGGCGGGCGCAGTGGGGGATGGCGCTGGGGCTGGCGATGCCGCTGCTGG
CGCTGGGCCTGCCGTTGAGCCTGAGCGGAGCGCTGGCCAACCTGCTGGCGGTGCCTTGGATCGAACTGCTGGTAGTGCCC
CGGCCCTGGCGGGGAGCCTGCTGCTGTGGGTGCCCGGGCTGGGCGAGGGGCTGCTTCGCGCCGCTGGCGTTTCGCTGGAC
CTGCTGTTTCGTGCGCTTGGCCTGCTGGCAGGCCTGGCCGAGGCCTGGCAGCCACCCGCCGCAGCGGCCTGGAGCGTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(201-431)

Domain of unknown function (DUF4131) (DUF4131)

(21-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

63.588

83.85

0.533

Multiple sequence alignment