Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HV98_RS10990 Genome accession   NZ_CP008869
Coordinates   2259406..2260041 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain W16407     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2254406..2265041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV98_RS10975 (HV98_17615) - 2255113..2256357 (+) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -
  HV98_RS10980 (HV98_17610) - 2256445..2256978 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  HV98_RS33065 comA 2257109..2258467 (+) 1359 WP_237113580.1 ComEC/Rec2 family competence protein Machinery gene
  HV98_RS33070 comA 2258476..2259333 (+) 858 WP_003091164.1 ComEC/Rec2 family competence protein Machinery gene
  HV98_RS10990 (HV98_17600) exbB 2259406..2260041 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HV98_RS10995 (HV98_17595) - 2260038..2260478 (+) 441 WP_003091161.1 ExbD/TolR family protein -
  HV98_RS11000 (HV98_17590) lpxK 2260478..2261476 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  HV98_RS11005 (HV98_17585) - 2261514..2261699 (+) 186 WP_003091157.1 Trm112 family protein -
  HV98_RS11010 (HV98_17580) kdsB 2261699..2262463 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HV98_RS11015 (HV98_17575) - 2262463..2262927 (+) 465 WP_003106924.1 low molecular weight protein-tyrosine-phosphatase -
  HV98_RS11020 (HV98_17570) murB 2262924..2263943 (+) 1020 WP_003106928.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=125199 HV98_RS10990 WP_003091163.1 2259406..2260041(+) (exbB) [Pseudomonas aeruginosa strain W16407]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=125199 HV98_RS10990 WP_003091163.1 2259406..2260041(+) (exbB) [Pseudomonas aeruginosa strain W16407]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81

Multiple sequence alignment