Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | VAB027_RS15380 | Genome accession | NZ_CP010812 |
| Coordinates | 3321309..3321779 (+) | Length | 156 a.a. |
| NCBI ID | WP_046127050.1 | Uniprot ID | - |
| Organism | Vibrio cholerae strain 10432-62 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3316309..3326779
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VAB027_RS15360 (VAB027_3045) | fldB | 3317131..3317649 (+) | 519 | WP_000690112.1 | flavodoxin FldB | - |
| VAB027_RS15365 (VAB027_3046) | - | 3317696..3319075 (-) | 1380 | WP_046127048.1 | IS4-like element ISVa18 family transposase | - |
| VAB027_RS15370 (VAB027_3047) | ampD | 3319333..3319878 (-) | 546 | WP_046127049.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| VAB027_RS15375 (VAB027_3048) | nadC | 3320174..3321064 (+) | 891 | WP_000665274.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| VAB027_RS15380 (VAB027_3049) | pilA | 3321309..3321779 (+) | 471 | WP_046127050.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| VAB027_RS15385 (VAB027_3050) | pilB | 3321802..3323490 (+) | 1689 | WP_046127051.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| VAB027_RS15390 (VAB027_3051) | pilC | 3323533..3324759 (+) | 1227 | WP_046127052.1 | type II secretion system F family protein | Machinery gene |
| VAB027_RS15395 (VAB027_3052) | pilD | 3324817..3325692 (+) | 876 | WP_046127053.1 | A24 family peptidase | Machinery gene |
| VAB027_RS15400 (VAB027_3053) | coaE | 3325689..3326297 (+) | 609 | WP_046127054.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 15876.85 Da Isoelectric Point: 6.9457
>NTDB_id=124535 VAB027_RS15380 WP_046127050.1 3321309..3321779(+) (pilA) [Vibrio cholerae strain 10432-62]
MKAYKNKQQQGFTLIELMIVVAIIGVLSAIAVPAYKDYVTKSEVASAVASLKSIITPAELHYQEYGAFPNDSTELERVGV
GSNAVKNGTLTFNKTAGTITLALASPSGVSAIITRDGSTGWSCAVTGLTNQSNAPKGCPQSDSGTGGTGDTGGSGS
MKAYKNKQQQGFTLIELMIVVAIIGVLSAIAVPAYKDYVTKSEVASAVASLKSIITPAELHYQEYGAFPNDSTELERVGV
GSNAVKNGTLTFNKTAGTITLALASPSGVSAIITRDGSTGWSCAVTGLTNQSNAPKGCPQSDSGTGGTGDTGGSGS
Nucleotide
Download Length: 471 bp
>NTDB_id=124535 VAB027_RS15380 WP_046127050.1 3321309..3321779(+) (pilA) [Vibrio cholerae strain 10432-62]
ATGAAAGCGTATAAAAACAAACAACAGCAAGGTTTTACCTTAATTGAATTGATGATTGTAGTGGCGATTATTGGTGTGTT
GTCAGCAATTGCTGTACCAGCTTATAAAGACTACGTAACCAAAAGTGAAGTGGCTTCTGCGGTAGCATCTTTAAAATCGA
TTATTACTCCAGCAGAACTTCATTACCAAGAATATGGAGCCTTCCCAAATGACAGCACAGAATTAGAAAGAGTCGGAGTA
GGCTCTAATGCTGTCAAAAATGGTACATTAACATTTAACAAAACAGCAGGAACTATAACTTTAGCATTAGCCTCACCTTC
AGGAGTATCAGCAATTATTACGAGAGATGGTTCAACAGGTTGGTCATGTGCTGTAACAGGTCTAACCAACCAGAGTAATG
CACCTAAAGGCTGTCCTCAATCGGATAGCGGCACTGGTGGCACTGGCGACACTGGTGGCTCTGGTAGTTAA
ATGAAAGCGTATAAAAACAAACAACAGCAAGGTTTTACCTTAATTGAATTGATGATTGTAGTGGCGATTATTGGTGTGTT
GTCAGCAATTGCTGTACCAGCTTATAAAGACTACGTAACCAAAAGTGAAGTGGCTTCTGCGGTAGCATCTTTAAAATCGA
TTATTACTCCAGCAGAACTTCATTACCAAGAATATGGAGCCTTCCCAAATGACAGCACAGAATTAGAAAGAGTCGGAGTA
GGCTCTAATGCTGTCAAAAATGGTACATTAACATTTAACAAAACAGCAGGAACTATAACTTTAGCATTAGCCTCACCTTC
AGGAGTATCAGCAATTATTACGAGAGATGGTTCAACAGGTTGGTCATGTGCTGTAACAGGTCTAACCAACCAGAGTAATG
CACCTAAAGGCTGTCCTCAATCGGATAGCGGCACTGGTGGCACTGGCGACACTGGTGGCTCTGGTAGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
51.562 |
82.051 |
0.423 |
| pilA | Pseudomonas aeruginosa PAK |
40.268 |
95.513 |
0.385 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
38.065 |
99.359 |
0.378 |
| pilA | Vibrio cholerae strain A1552 |
38.065 |
99.359 |
0.378 |
| pilA | Vibrio cholerae C6706 |
38.065 |
99.359 |
0.378 |