Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KPNIH1_RS09680 Genome accession   NZ_CP008827
Coordinates   1943856..1944452 (+) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae subsp. pneumoniae KPNIH1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1938856..1949452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPNIH1_RS09660 (KPNIH1_09335) - 1939048..1940805 (-) 1758 WP_002898401.1 Lon protease family protein -
  KPNIH1_RS09665 (KPNIH1_09340) matP 1940991..1941443 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  KPNIH1_RS09670 (KPNIH1_09345) ompA 1941575..1942645 (-) 1071 WP_002898408.1 porin OmpA -
  KPNIH1_RS09675 (KPNIH1_09350) sulA 1942998..1943507 (-) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  KPNIH1_RS09680 (KPNIH1_09355) sxy/tfoX 1943856..1944452 (+) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  KPNIH1_RS09685 (KPNIH1_09360) yccS 1944466..1946601 (-) 2136 WP_002898422.1 YccS family putative transporter -
  KPNIH1_RS09690 (KPNIH1_09365) - 1946619..1947065 (-) 447 WP_002898425.1 YccF domain-containing protein -
  KPNIH1_RS09695 (KPNIH1_09370) helD 1947190..1949244 (+) 2055 WP_002898429.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=124538 KPNIH1_RS09680 WP_004150836.1 1943856..1944452(+) (sxy/tfoX) [Klebsiella pneumoniae subsp. pneumoniae KPNIH1]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=124538 KPNIH1_RS09680 WP_004150836.1 1943856..1944452(+) (sxy/tfoX) [Klebsiella pneumoniae subsp. pneumoniae KPNIH1]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment