Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | C645_RS03025 | Genome accession | NZ_CP008740 |
| Coordinates | 582190..582603 (-) | Length | 137 a.a. |
| NCBI ID | WP_011272047.1 | Uniprot ID | Q4QNA9 |
| Organism | Haemophilus influenzae 2019 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 577190..587603
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C645_RS02995 (C645_03050) | - | 577573..577845 (-) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
| C645_RS03000 (C645_03055) | - | 577985..578575 (-) | 591 | WP_005656455.1 | YjaG family protein | - |
| C645_RS03005 (C645_03060) | nudC | 578611..579405 (-) | 795 | WP_005656457.1 | NAD(+) diphosphatase | - |
| C645_RS03010 (C645_03065) | nfuA | 579472..580068 (-) | 597 | WP_005656459.1 | Fe-S biogenesis protein NfuA | - |
| C645_RS03015 (C645_03070) | - | 580144..580830 (-) | 687 | WP_005688731.1 | ComF family protein | - |
| C645_RS03020 (C645_03075) | comE | 580843..582180 (-) | 1338 | WP_005659796.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| C645_RS03025 (C645_03080) | comD | 582190..582603 (-) | 414 | WP_011272047.1 | pilus assembly protein PilP | Machinery gene |
| C645_RS03030 (C645_03085) | comC | 582600..583121 (-) | 522 | WP_046067623.1 | competence protein ComC | Machinery gene |
| C645_RS03035 (C645_03090) | comB | 583118..583624 (-) | 507 | WP_005656467.1 | competence protein ComB | Machinery gene |
| C645_RS03040 (C645_03095) | comA | 583625..584422 (-) | 798 | WP_005656469.1 | pilus assembly protein PilM | Machinery gene |
| C645_RS03045 (C645_03100) | - | 584518..587112 (+) | 2595 | WP_005656471.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15695.85 Da Isoelectric Point: 4.5625
>NTDB_id=123955 C645_RS03025 WP_011272047.1 582190..582603(-) (comD) [Haemophilus influenzae 2019]
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=123955 C645_RS03025 WP_011272047.1 582190..582603(-) (comD) [Haemophilus influenzae 2019]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae 86-028NP |
100 |
100 |
1 |
| comD | Haemophilus influenzae Rd KW20 |
99.27 |
100 |
0.993 |