Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   C645_RS03030 Genome accession   NZ_CP008740
Coordinates   582600..583121 (-) Length   173 a.a.
NCBI ID   WP_046067623.1    Uniprot ID   -
Organism   Haemophilus influenzae 2019     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 577600..588121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C645_RS03000 (C645_03055) - 577985..578575 (-) 591 WP_005656455.1 YjaG family protein -
  C645_RS03005 (C645_03060) nudC 578611..579405 (-) 795 WP_005656457.1 NAD(+) diphosphatase -
  C645_RS03010 (C645_03065) nfuA 579472..580068 (-) 597 WP_005656459.1 Fe-S biogenesis protein NfuA -
  C645_RS03015 (C645_03070) - 580144..580830 (-) 687 WP_005688731.1 ComF family protein -
  C645_RS03020 (C645_03075) comE 580843..582180 (-) 1338 WP_005659796.1 type IV pilus secretin PilQ family protein Machinery gene
  C645_RS03025 (C645_03080) comD 582190..582603 (-) 414 WP_011272047.1 pilus assembly protein PilP Machinery gene
  C645_RS03030 (C645_03085) comC 582600..583121 (-) 522 WP_046067623.1 competence protein ComC Machinery gene
  C645_RS03035 (C645_03090) comB 583118..583624 (-) 507 WP_005656467.1 competence protein ComB Machinery gene
  C645_RS03040 (C645_03095) comA 583625..584422 (-) 798 WP_005656469.1 pilus assembly protein PilM Machinery gene
  C645_RS03045 (C645_03100) - 584518..587112 (+) 2595 WP_005656471.1 penicillin-binding protein 1A -
  C645_RS03050 (C645_03105) - 587185..588030 (+) 846 WP_005656472.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19980.25 Da        Isoelectric Point: 9.7974

>NTDB_id=123956 C645_RS03030 WP_046067623.1 582600..583121(-) (comC) [Haemophilus influenzae 2019]
MKAFFNDPLTPFGKWLSQPFYVHGLTFLLLLSAVIFRPVLDYIEGSSRFHEIENELAVKRSELLHQQKILTSLQQQSESR
KLSPELVAQIIPLNKQIQRLAARYGLSQHLRWEMGQQPILHLQLVGHFEKTKTFLTALLANASQLSVSRLQFMKPEDGPL
QTEIIFQLDKETK

Nucleotide


Download         Length: 522 bp        

>NTDB_id=123956 C645_RS03030 WP_046067623.1 582600..583121(-) (comC) [Haemophilus influenzae 2019]
ATGAAAGCTTTTTTTAACGATCCTTTGACTCCTTTTGGAAAATGGCTAAGTCAGCCTTTTTATGTGCACGGTTTAACCTT
TTTATTGCTATTAAGTGCGGTGATTTTTCGCCCCGTTTTAGATTATATCGAGGGGAGTTCACGTTTCCATGAAATTGAAA
ATGAGTTAGCGGTGAAACGTTCAGAATTGTTGCATCAACAGAAAATTTTAACCTCTTTACAACAGCAGTCGGAAAGTCGA
AAACTTTCTCCAGAACTGGTTGCACAAATTATTCCTTTGAATAAACAAATTCAACGTTTAGCTGCACGCTACGGTTTATC
TCAGCATTTACGTTGGGAAATGGGGCAACAGCCTATTTTGCATTTACAGCTTGTGGGGCATTTTGAAAAAACGAAGACAT
TTTTAACCGCACTTTTGGCTAATGCGTCACAGCTTTCTGTAAGTCGGTTGCAATTTATGAAACCCGAAGACGGCCCATTG
CAAACCGAGATCATTTTTCAGCTAGATAAGGAAACAAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Haemophilus influenzae Rd KW20

95.954

100

0.96
  comC Haemophilus influenzae 86-028NP

95.376

100

0.954

Multiple sequence alignment