Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   FE90_RS06380 Genome accession   NZ_CP008695
Coordinates   1239268..1240770 (-) Length   500 a.a.
NCBI ID   WP_011017334.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain M23ND     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1234268..1245770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FE90_RS09800 (FE90_1262) - 1234740..1235033 (+) 294 WP_038433283.1 transposase -
  FE90_RS10140 - 1235177..1235287 (+) 111 WP_238578131.1 IS3 family transposase -
  FE90_RS10145 - 1235265..1235597 (-) 333 Protein_1237 DDE-type integrase/transposase/recombinase -
  FE90_RS10150 - 1235639..1235722 (+) 84 Protein_1238 integrase core domain-containing protein -
  FE90_RS10045 (FE90_1265) - 1235960..1236199 (+) 240 WP_038433587.1 hypothetical protein -
  FE90_RS10355 - 1236226..1236309 (+) 84 Protein_1240 IS3 family transposase -
  FE90_RS06365 (FE90_1266) amiF 1236347..1237270 (-) 924 WP_038433588.1 ATP-binding cassette domain-containing protein Regulator
  FE90_RS06370 (FE90_1267) amiE 1237263..1238333 (-) 1071 WP_010921893.1 ABC transporter ATP-binding protein Regulator
  FE90_RS06375 (FE90_1268) amiD 1238342..1239268 (-) 927 WP_002986004.1 oligopeptide ABC transporter permease OppC Regulator
  FE90_RS06380 (FE90_1269) amiC 1239268..1240770 (-) 1503 WP_011017334.1 ABC transporter permease Regulator
  FE90_RS06385 (FE90_1270) amiA 1240835..1242805 (-) 1971 WP_038433589.1 peptide ABC transporter substrate-binding protein Regulator
  FE90_RS06390 (FE90_1271) - 1243039..1244022 (+) 984 WP_038433590.1 IS30-like element IS1239 family transposase -
  FE90_RS06395 (FE90_1272) pbp3 1244222..1245454 (+) 1233 WP_038433591.1 D-alanyl-D-alanine carboxypeptidase PBP3 -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 56149.52 Da        Isoelectric Point: 10.2222

>NTDB_id=123594 FE90_RS06380 WP_011017334.1 1239268..1240770(-) (amiC) [Streptococcus pyogenes strain M23ND]
MKKYILNRIMRSLVSVVLVTALTYTIVYTLVPTSLIFKQDPNYNKMTTTPDKKVAYENLTFQRMGYVNYFSSKELKDNAS
KVDSSVTTEATSANKAIYEKYIDSLGNGWQLKRFPTSKQFYAIRNIPIYERVWNFFSNLVVIDHPWKIQDKDNPKLARYI
RLEKDKSVGWSLVGSGTKHKYLLYTNGKFPYLHQNFVTLNLGTSYPTYSNIPVLQVISQGQGRTALQDVTFPSGVTKKSS
VDIYSRSYKNPKSLDDITKVNYGKGDSYTKTINNYVDPSMIHNSFVIGFFGVMFSYIVGLPLGLFMARFKNTYFDRFSTA
TMTFMLALPSIAVIYVVRFLGGMVGLPDSFPMLGASDPKSYILPALILGILNIPTTVIWFRRYLVDLQASDWVRFARSKG
LSESEIYRGHLFKNAMVPIVSGVPASIILAIGGATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIVSLLLG
DIVMTLVDPRIKLSTKKGGK

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=123594 FE90_RS06380 WP_011017334.1 1239268..1240770(-) (amiC) [Streptococcus pyogenes strain M23ND]
ATGAAAAAATATATTTTAAACCGTATCATGCGATCGTTAGTGTCGGTAGTTTTGGTAACGGCTTTAACATACACCATCGT
ATATACTCTAGTACCTACCAGCCTTATCTTTAAACAAGACCCTAATTATAATAAAATGACAACAACACCAGATAAAAAAG
TAGCGTATGAAAATCTAACTTTTCAACGTATGGGTTATGTCAATTATTTTTCAAGCAAAGAATTAAAAGATAATGCTTCT
AAAGTAGATAGTAGTGTAACGACAGAAGCAACTAGTGCTAACAAAGCTATCTATGAGAAGTATATTGATTCTCTTGGCAA
TGGCTGGCAGCTAAAACGCTTCCCCACTAGCAAACAGTTTTATGCAATTCGCAATATTCCTATTTACGAACGTGTTTGGA
ACTTTTTCTCAAATCTAGTTGTTATTGATCACCCTTGGAAGATTCAGGATAAAGATAATCCAAAATTAGCTAGGTATATT
CGTCTAGAAAAAGATAAATCAGTTGGCTGGTCACTTGTTGGTTCGGGGACAAAACATAAGTATCTCCTCTATACTAACGG
AAAATTTCCTTATCTTCACCAAAACTTTGTTACCCTAAACTTAGGAACATCTTATCCAACATACAGCAATATTCCTGTTC
TTCAGGTTATTTCACAAGGGCAAGGACGAACAGCTCTTCAAGATGTGACCTTCCCATCAGGTGTCACTAAGAAATCGTCA
GTGGATATCTATAGCCGTAGCTACAAAAATCCAAAATCATTGGATGATATCACCAAGGTAAACTATGGTAAGGGAGATTC
CTACACTAAAACCATCAATAATTATGTCGACCCATCAATGATTCACAATTCTTTTGTAATTGGTTTTTTTGGTGTTATGT
TTTCCTATATCGTTGGTTTGCCTCTTGGTTTATTTATGGCTCGGTTTAAAAATACCTATTTTGACCGTTTCTCAACAGCG
ACCATGACCTTCATGCTTGCTTTACCAAGTATTGCTGTTATCTATGTTGTTCGCTTCCTAGGTGGCATGGTTGGTTTACC
AGATAGTTTCCCAATGCTGGGGGCATCTGATCCTAAATCTTATATTTTACCAGCCCTTATTTTAGGAATTTTAAATATTC
CAACTACGGTTATCTGGTTCCGTCGCTATCTTGTTGACCTTCAGGCCAGCGATTGGGTACGTTTTGCGCGTTCAAAAGGA
TTATCAGAATCTGAAATTTACAGAGGGCATCTCTTCAAAAATGCCATGGTCCCAATTGTGTCAGGGGTTCCTGCAAGTAT
TATCCTTGCTATTGGTGGTGCAACATTAACAGAGACTGTCTTTGCCTTCCCGGGTATGGGTAAAATGTTAATTGATTCTA
TTAAATCTGCTAACAATTCTATGATTGTTGGATTAACCTTTATCTTCACTGTCTTGTCAATTGTTTCACTTTTACTAGGA
GATATTGTCATGACCCTTGTCGATCCACGTATTAAATTGTCAACAAAAAAAGGAGGTAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

59.6

100

0.596
  amiC Streptococcus thermophilus LMD-9

59.2

100

0.592
  amiC Streptococcus thermophilus LMG 18311

59.2

100

0.592

Multiple sequence alignment