Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   FE90_RS06365 Genome accession   NZ_CP008695
Coordinates   1236347..1237270 (-) Length   307 a.a.
NCBI ID   WP_038433588.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain M23ND     
Function   internalize XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1234740..1235402 1236347..1237270 flank 945


Gene organization within MGE regions


Location: 1234740..1237270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FE90_RS09800 (FE90_1262) - 1234740..1235033 (+) 294 WP_038433283.1 transposase -
  FE90_RS10140 - 1235177..1235287 (+) 111 WP_238578131.1 IS3 family transposase -
  FE90_RS10145 - 1235265..1235597 (-) 333 Protein_1237 DDE-type integrase/transposase/recombinase -
  FE90_RS10150 - 1235639..1235722 (+) 84 Protein_1238 integrase core domain-containing protein -
  FE90_RS10045 (FE90_1265) - 1235960..1236199 (+) 240 WP_038433587.1 hypothetical protein -
  FE90_RS10355 - 1236226..1236309 (+) 84 Protein_1240 IS3 family transposase -
  FE90_RS06365 (FE90_1266) amiF 1236347..1237270 (-) 924 WP_038433588.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34775.96 Da        Isoelectric Point: 6.5113

>NTDB_id=123591 FE90_RS06365 WP_038433588.1 1236347..1237270(-) (amiF) [Streptococcus pyogenes strain M23ND]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFIKKGETFSLVGESGSGKTTIGRAIIGLNDTSSGQILYDGKVINGRKSKS
EANELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKTEEERKEKIKNMMAEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMNPEFVIADEPISALDVSVRAQVLNLFKRMQPEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFN
NPIHPYTQSLLSAVPIPDPILERQKELVVYHPDQHDYTLDKPSMVEIKPNHFVWANQAEIEKYQKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=123591 FE90_RS06365 WP_038433588.1 1236347..1237270(-) (amiF) [Streptococcus pyogenes strain M23ND]
ATGTCTGAGAAATTAGTCGAAGTAAAAGACCTAGAAATTTCCTTCGGAGAAGGAAAGAAAAAATTTGTTGCAGTTAAAAA
TGCTAATTTCTTTATTAAAAAAGGAGAAACCTTTTCTTTAGTTGGAGAATCTGGGAGTGGTAAAACAACAATTGGTCGTG
CTATTATTGGTTTGAACGATACTAGTTCAGGTCAAATTTTATACGATGGGAAAGTAATTAATGGCAGAAAATCAAAATCA
GAAGCCAATGAGCTCATTCGTAAAATTCAAATGATTTTCCAAGATCCCGCTGCTAGTTTGAATGAACGAGCAACCGTTGA
CTACATCATTTCAGAAGGTCTTTATAACTTTAATCTGTTTAAAACAGAGGAAGAACGTAAAGAAAAAATTAAGAACATGA
TGGCCGAAGTTGGTTTGCTATCAGAGCATTTGACGCGCTACCCACATGAATTTTCAGGAGGTCAACGTCAGCGGATCGGT
ATCGCTAGAGCCCTAGTAATGAACCCTGAATTCGTTATTGCTGATGAACCGATTTCAGCTTTGGACGTTTCCGTTCGCGC
ACAGGTTTTAAACCTTTTCAAACGGATGCAACCCGAAAAAGGTTTGACTTATCTCTTCATTGCCCATGATCTTTCAGTCG
TTCGCTTTATTTCAGATCGTATTGCGGTTATCCATAAAGGGGTTATTGTAGAAGTTGCAGAAACAGAAGAACTGTTTAAT
AACCCAATTCATCCCTACACTCAATCCTTGTTATCAGCCGTGCCTATCCCAGATCCAATTTTAGAACGTCAAAAAGAACT
TGTTGTCTATCATCCAGACCAGCATGATTATACATTAGATAAGCCATCGATGGTTGAAATCAAACCAAATCACTTTGTTT
GGGCAAACCAAGCAGAAATTGAAAAATATCAAAAAGAATTGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

82.026

99.674

0.818
  amiF Streptococcus thermophilus LMD-9

81.699

99.674

0.814
  amiF Streptococcus salivarius strain HSISS4

81.699

99.674

0.814

Multiple sequence alignment