Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   BMMGA3_RS15290 Genome accession   NZ_CP007739
Coordinates   3161060..3161437 (-) Length   125 a.a.
NCBI ID   WP_003346745.1    Uniprot ID   I3EBG5
Organism   Bacillus methanolicus MGA3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3156060..3166437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMMGA3_RS15265 (BMMGA3_15795) - 3156482..3156910 (-) 429 WP_003346733.1 hypothetical protein -
  BMMGA3_RS15270 (BMMGA3_15800) - 3157001..3157492 (-) 492 WP_003346735.1 HXXEE domain-containing protein -
  BMMGA3_RS15275 (BMMGA3_15805) - 3158075..3159520 (-) 1446 WP_003346738.1 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase -
  BMMGA3_RS15280 (BMMGA3_15810) - 3159924..3160607 (-) 684 WP_003346740.1 TerC family protein -
  BMMGA3_RS15285 (BMMGA3_15815) - 3160825..3161073 (-) 249 WP_003346743.1 hypothetical protein -
  BMMGA3_RS15290 (BMMGA3_15820) ssbB 3161060..3161437 (-) 378 WP_003346745.1 single-stranded DNA-binding protein Machinery gene
  BMMGA3_RS15295 (BMMGA3_15825) - 3161737..3162159 (+) 423 WP_003346747.1 YwpF-like family protein -
  BMMGA3_RS15300 (BMMGA3_15830) - 3162254..3162481 (-) 228 WP_003346749.1 hypothetical protein -
  BMMGA3_RS15305 (BMMGA3_15835) - 3162643..3162918 (-) 276 WP_003346753.1 hypothetical protein -
  BMMGA3_RS15310 (BMMGA3_15840) fabZ 3163038..3163472 (-) 435 WP_003346755.1 3-hydroxyacyl-ACP dehydratase FabZ -
  BMMGA3_RS15315 (BMMGA3_15845) - 3163626..3163907 (-) 282 WP_003346757.1 DNA-directed RNA polymerase subunit beta -
  BMMGA3_RS15320 (BMMGA3_15850) - 3163923..3164765 (-) 843 WP_003346760.1 flagellar hook-basal body protein -
  BMMGA3_RS15325 (BMMGA3_15855) - 3164816..3165655 (-) 840 WP_003346761.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 14189.12 Da        Isoelectric Point: 9.4666

>NTDB_id=123018 BMMGA3_RS15290 WP_003346745.1 3161060..3161437(-) (ssbB) [Bacillus methanolicus MGA3]
MINQVTLVGRLTRDPELRVTPDGTYVANIILAVNRNYRNQNGEIDTDFVQCTLWKKIAENTAQYCRKGSVLGITGRIQTR
NYENQEGKKVFVTEVVAEGVRFLSPKPSAEHTKQKEKEAFTVEKS

Nucleotide


Download         Length: 378 bp        

>NTDB_id=123018 BMMGA3_RS15290 WP_003346745.1 3161060..3161437(-) (ssbB) [Bacillus methanolicus MGA3]
TTGATCAACCAAGTTACACTTGTCGGGAGGCTGACCAGAGACCCTGAATTAAGGGTTACACCCGATGGTACGTACGTAGC
CAATATCATTTTAGCGGTCAACCGCAACTATCGAAACCAGAATGGAGAAATCGACACTGACTTTGTCCAATGCACCCTCT
GGAAAAAAATCGCCGAGAACACGGCACAATATTGCAGGAAAGGTTCAGTGCTCGGAATCACAGGCAGAATCCAAACGAGA
AACTACGAAAATCAAGAAGGTAAAAAAGTTTTTGTAACAGAGGTTGTTGCTGAAGGTGTCCGATTCCTGAGCCCAAAGCC
TTCAGCTGAACATACCAAACAAAAAGAAAAGGAGGCTTTTACTGTTGAAAAATCATGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I3EBG5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.551

85.6

0.544
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.377

84.8

0.512
  ssb Latilactobacillus sakei subsp. sakei 23K

50.45

88.8

0.448
  ssbB/cilA Streptococcus mitis NCTC 12261

42.991

85.6

0.368
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.991

85.6

0.368
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.453

84.8

0.36

Multiple sequence alignment