Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   WS08_RS02035 Genome accession   NZ_CP007588
Coordinates   402855..404666 (+) Length   603 a.a.
NCBI ID   WP_009764931.1    Uniprot ID   -
Organism   Weissella tructae strain WS08     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 397855..409666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WS08_RS01995 (WS08_0346) - 397905..398549 (-) 645 WP_009764923.1 deoxynucleoside kinase -
  WS08_RS02000 (WS08_0347) mscL 398711..399079 (-) 369 WP_009764924.1 large conductance mechanosensitive channel protein MscL -
  WS08_RS02005 (WS08_0348) - 399217..400053 (+) 837 WP_009764925.1 Cof-type HAD-IIB family hydrolase -
  WS08_RS02010 (WS08_0349) - 400053..400265 (+) 213 WP_009764926.1 hypothetical protein -
  WS08_RS02015 (WS08_0350) - 400249..400959 (+) 711 WP_009764927.1 CPBP family intramembrane glutamic endopeptidase -
  WS08_RS02020 (WS08_0351) - 401000..401518 (+) 519 WP_009764928.1 antibiotic biosynthesis monooxygenase family protein -
  WS08_RS02025 (WS08_0352) - 401534..401998 (+) 465 WP_009764929.1 phosphate-starvation-inducible PsiE family protein -
  WS08_RS02030 (WS08_0353) - 402033..402722 (+) 690 WP_009764930.1 adaptor protein MecA -
  WS08_RS02035 (WS08_0354) pepF 402855..404666 (+) 1812 WP_009764931.1 oligoendopeptidase F Regulator
  WS08_RS02040 (WS08_0355) - 404753..405109 (+) 357 WP_009764932.1 DUF948 domain-containing protein -
  WS08_RS02045 (WS08_0356) - 405142..405870 (+) 729 WP_009764933.1 hypothetical protein -
  WS08_RS02050 (WS08_0357) - 405922..407022 (-) 1101 WP_009764934.1 M24 family metallopeptidase -
  WS08_RS02055 (WS08_0358) ccpA 407197..408198 (+) 1002 WP_009764935.1 catabolite control protein A -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 68071.74 Da        Isoelectric Point: 4.2284

>NTDB_id=121374 WS08_RS02035 WP_009764931.1 402855..404666(+) (pepF) [Weissella tructae strain WS08]
MSQELLQRDELPTAMTWDLATIFPNDDAWEDLFEDVAERLESAEYFAGTVTNSGPQLLGALQYGLNLMRDLEKVYVYASM
KSDQDTANGYYQAMNNRAEALGAQVGAAIAFFDPAILALTEAELAALFEETPELAQFEHYFESLLTQRGHVLPAEQETLL
AAAGDIFGASQRTFSVLDNADIQFGRVENADGEWEQLSNGVYSKLLESTDGRVRQDAFQTFYESYIALENTLASTLASHV
KGHNYMARVHNYETARQSSLASNHVPEAVYETLVTETNKALPLLHRYVALRKRLLGVSELHSYDLYTPILGEPDYAIDYT
SAQATALEALRPLGDDYLDVVNKAFDERWIDVPENKGKRSGAYSGGSYDTNPFILLNWVDNLNNLYTLVHEMGHSVHSYL
TRQNQPYHYGDYPIFLAEIASTTNENLLTDYLLETIDDKALRAFVLNQYLDGVKGTMFRQTQFAEFEQWMHHQDAQGIPL
TADVLNEAYAELNQRYYGPSLEVDPEIANEWSRIPHFYYNFYVFQYSTGFAAATAMAHEMKTKGATAVDAYKNYLKAGSS
AFPIDVMKTAGVDMLQPTYLQETFAIFEERLNEFEALVNELDM

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=121374 WS08_RS02035 WP_009764931.1 402855..404666(+) (pepF) [Weissella tructae strain WS08]
ATGAGTCAAGAACTTTTACAACGAGATGAATTGCCAACGGCAATGACTTGGGATCTCGCAACTATTTTTCCAAATGATGA
TGCTTGGGAAGATTTATTTGAAGATGTTGCTGAACGTCTAGAGTCAGCTGAATACTTTGCCGGAACTGTTACAAATTCAG
GACCACAATTGTTAGGTGCCTTACAATATGGTTTGAACTTGATGCGTGACTTAGAAAAAGTTTACGTATATGCATCAATG
AAAAGTGACCAAGATACAGCGAATGGTTATTACCAAGCGATGAATAATCGTGCGGAAGCGTTGGGTGCCCAAGTTGGTGC
AGCGATTGCTTTCTTTGATCCAGCTATCTTGGCCTTAACAGAAGCAGAATTAGCGGCTTTGTTTGAAGAGACACCAGAAT
TAGCACAATTCGAACATTACTTTGAAAGCCTATTAACACAACGTGGCCACGTGTTACCAGCGGAACAAGAAACATTATTG
GCTGCGGCTGGAGATATCTTTGGTGCCTCACAACGTACCTTTAGTGTCTTAGACAACGCTGACATTCAATTTGGGCGTGT
TGAAAACGCTGATGGTGAATGGGAACAATTGTCAAATGGTGTGTATTCAAAGTTACTAGAATCAACAGATGGGCGTGTTC
GTCAAGATGCCTTCCAAACATTCTATGAATCATATATCGCTTTAGAAAACACATTGGCCTCAACATTAGCTAGTCATGTT
AAGGGACACAATTATATGGCTCGTGTTCATAATTATGAAACAGCCCGTCAATCTTCATTGGCAAGTAACCATGTACCAGA
AGCAGTGTATGAAACATTGGTGACAGAAACAAACAAGGCACTACCATTGCTACACCGTTACGTGGCTTTGCGTAAGCGTT
TATTAGGTGTTTCAGAACTACATTCATATGATTTGTACACACCAATCTTGGGTGAACCAGATTACGCCATCGATTATACA
TCTGCACAAGCGACAGCGTTAGAAGCGTTGCGTCCATTAGGGGATGACTATTTAGATGTTGTAAACAAGGCATTTGATGA
ACGTTGGATTGACGTACCTGAAAACAAGGGAAAGCGCTCAGGGGCTTATTCTGGTGGTTCTTATGATACGAATCCGTTTA
TTTTGTTGAATTGGGTTGATAACTTGAACAACTTGTACACATTGGTGCATGAGATGGGGCACAGTGTTCACAGTTACTTA
ACACGTCAAAATCAACCATATCACTACGGTGATTACCCAATCTTCTTGGCGGAAATTGCCTCAACAACGAATGAAAATCT
GTTAACAGATTATTTGTTGGAAACAATTGATGATAAGGCGTTACGTGCGTTTGTATTGAATCAATATTTAGATGGTGTAA
AGGGAACGATGTTCCGTCAAACACAATTTGCGGAATTTGAACAATGGATGCATCATCAAGATGCGCAAGGTATTCCGTTG
ACGGCTGATGTTTTGAACGAAGCGTATGCTGAATTAAACCAACGTTACTACGGTCCAAGTCTTGAAGTTGATCCAGAAAT
TGCGAATGAATGGTCACGTATTCCACACTTCTACTACAATTTCTATGTCTTCCAATACAGTACTGGATTCGCTGCTGCAA
CAGCGATGGCACATGAAATGAAGACAAAGGGTGCGACAGCCGTGGATGCATACAAGAACTATTTGAAGGCTGGTTCATCA
GCGTTCCCAATTGATGTGATGAAGACAGCAGGGGTTGATATGTTACAACCAACATACTTGCAAGAAACATTTGCGATTTT
TGAAGAACGACTAAATGAATTTGAAGCATTAGTTAATGAATTAGATATGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(205-585)

Oligopeptidase F (Peptidase_M3_N)

(116-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.277

98.342

0.514

Multiple sequence alignment