Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   NMA510612_RS05605 Genome accession   NZ_CP007524
Coordinates   1064352..1064825 (+) Length   157 a.a.
NCBI ID   WP_002246122.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 510612     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1059352..1069825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMA510612_RS05580 (NMA510612_1225) dnaB 1059759..1061165 (+) 1407 WP_002246117.1 replicative DNA helicase -
  NMA510612_RS05585 (NMA510612_1226) pilH 1061474..1062151 (+) 678 WP_002246118.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NMA510612_RS05590 (NMA510612_1227) pilV 1062175..1062786 (+) 612 WP_002249636.1 type IV pilus modification protein PilV Machinery gene
  NMA510612_RS05595 (NMA510612_1228) pilJ 1062783..1063772 (+) 990 WP_002246120.1 PilW family protein Machinery gene
  NMA510612_RS05600 (NMA510612_1229) pilK 1063751..1064347 (+) 597 WP_002246121.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NMA510612_RS05605 (NMA510612_1230) pilX 1064352..1064825 (+) 474 WP_002246122.1 PilX family type IV pilin Machinery gene
  NMA510612_RS05610 (NMA510612_1231) - 1066482..1066910 (-) 429 Protein_1062 AzlC family ABC transporter permease -
  NMA510612_RS05615 (NMA510612_1232) dut 1067058..1067510 (+) 453 WP_002245956.1 dUTP diphosphatase -
  NMA510612_RS05620 (NMA510612_1233) dapC 1067587..1068774 (+) 1188 WP_002245957.1 succinyldiaminopimelate transaminase -
  NMA510612_RS15560 - 1068862..1068987 (+) 126 Protein_1065 IS5/IS1182 family transposase -
  NMA510612_RS05625 (NMA510612_1235) yaaA 1069036..1069815 (+) 780 WP_002245958.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17464.20 Da        Isoelectric Point: 9.1873

>NTDB_id=120317 NMA510612_RS05605 WP_002246122.1 1064352..1064825(+) (pilX) [Neisseria meningitidis strain 510612]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNISKQFILKNPLDDNQTIKSKLEIFVSGYKM
NPKIAEKYNVSVHFVNKEKPRAYSLVGVPKTGTGYTLSVWMNSVGDGYKCRDKASAEALSETLSADAGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=120317 NMA510612_RS05605 WP_002246122.1 1064352..1064825(+) (pilX) [Neisseria meningitidis strain 510612]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTCGTCGCGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATATTTCCAAAC
AGTTTATTTTGAAAAATCCCCTGGACGATAATCAGACCATCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCGAAAAATATAATGTTTCGGTGCATTTTGTCAATAAGGAAAAACCAAGGGCATACAGCTTGGTCGG
CGTTCCAAAGACGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATAAGG
CTTCTGCCGAAGCCTTATCGGAGACCTTGTCCGCAGATGCCGGCTGTGAAGCCTTCTCTAATCGTAAAAAATAA

Domains

Predicted by InterproScan.

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Neisseria meningitidis 8013

95.541

100

0.955
  pilL Neisseria gonorrhoeae MS11

85.987

100

0.86

Multiple sequence alignment