Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   NMA510612_RS05590 Genome accession   NZ_CP007524
Coordinates   1062175..1062786 (+) Length   203 a.a.
NCBI ID   WP_002249636.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 510612     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1057175..1067786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMA510612_RS05565 (NMA510612_1222) - 1057289..1057621 (+) 333 WP_002213854.1 hypothetical protein -
  NMA510612_RS05570 (NMA510612_1223) - 1057953..1058462 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  NMA510612_RS05575 (NMA510612_1224) - 1059009..1059596 (-) 588 WP_002246116.1 superoxide dismutase -
  NMA510612_RS05580 (NMA510612_1225) dnaB 1059759..1061165 (+) 1407 WP_002246117.1 replicative DNA helicase -
  NMA510612_RS05585 (NMA510612_1226) pilH 1061474..1062151 (+) 678 WP_002246118.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NMA510612_RS05590 (NMA510612_1227) pilV 1062175..1062786 (+) 612 WP_002249636.1 type IV pilus modification protein PilV Machinery gene
  NMA510612_RS05595 (NMA510612_1228) pilJ 1062783..1063772 (+) 990 WP_002246120.1 PilW family protein Machinery gene
  NMA510612_RS05600 (NMA510612_1229) pilK 1063751..1064347 (+) 597 WP_002246121.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NMA510612_RS05605 (NMA510612_1230) pilX 1064352..1064825 (+) 474 WP_002246122.1 PilX family type IV pilin Machinery gene
  NMA510612_RS05610 (NMA510612_1231) - 1066482..1066910 (-) 429 Protein_1062 AzlC family ABC transporter permease -
  NMA510612_RS05615 (NMA510612_1232) dut 1067058..1067510 (+) 453 WP_002245956.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 21953.91 Da        Isoelectric Point: 4.9853

>NTDB_id=120314 NMA510612_RS05590 WP_002249636.1 1062175..1062786(+) (pilV) [Neisseria meningitidis strain 510612]
MKNNDCFRLKDSQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKN
YNLYMRNHTLSAVGGDFAIDAIKTKAQLAEEQLKRFSYELKNALPDAAAIHYAVCKDSLGAAPTLSAGSAFSQNCDGSAN
GDTLIKVLWVNDSAGDSDIARTNLETNGNNIVYTYQARVGGRE

Nucleotide


Download         Length: 612 bp        

>NTDB_id=120314 NMA510612_RS05590 WP_002249636.1 1062175..1062786(+) (pilV) [Neisseria meningitidis strain 510612]
ATGAAGAATAATGATTGCTTCCGCCTGAAAGATTCCCAGTCCGGTATGGCGCTGATAGAAGTCTTGGTTGCTATGCTCGT
TCTGACCATCGGTATTTTGGCGTTACTGTCTGTGCAGTTGCGGACAGTCGCTTCCGTCAGGGAGGCGGAGACACAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTCGGACAGCAACAAGAAAAAC
TATAATCTTTACATGAGAAACCATACACTATCAGCTGTGGGTGGCGATTTTGCGATTGATGCCATAAAAACTAAGGCGCA
GTTGGCAGAGGAACAATTGAAGAGATTTAGTTATGAGCTGAAAAATGCCTTGCCGGATGCGGCAGCCATCCATTACGCCG
TCTGCAAGGATTCGTTGGGTGCTGCGCCGACATTGTCCGCCGGCAGTGCTTTTTCTCAAAATTGCGATGGTAGTGCAAAT
GGGGATACTTTGATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATCGCCCGTACGAATCTTGAGACGAA
CGGCAACAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCGGGAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Neisseria meningitidis 8013

89.372

100

0.911
  pilI Neisseria gonorrhoeae MS11

79.31

100

0.793
  pilV Neisseria gonorrhoeae MS11

79.31

100

0.793

Multiple sequence alignment