Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   NMA510612_RS05585 Genome accession   NZ_CP007524
Coordinates   1061474..1062151 (+) Length   225 a.a.
NCBI ID   WP_002246118.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 510612     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1056474..1067151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMA510612_RS15555 - 1057137..1057244 (+) 108 Protein_1052 IS5/IS1182 family transposase -
  NMA510612_RS05565 (NMA510612_1222) - 1057289..1057621 (+) 333 WP_002213854.1 hypothetical protein -
  NMA510612_RS05570 (NMA510612_1223) - 1057953..1058462 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  NMA510612_RS05575 (NMA510612_1224) - 1059009..1059596 (-) 588 WP_002246116.1 superoxide dismutase -
  NMA510612_RS05580 (NMA510612_1225) dnaB 1059759..1061165 (+) 1407 WP_002246117.1 replicative DNA helicase -
  NMA510612_RS05585 (NMA510612_1226) pilH 1061474..1062151 (+) 678 WP_002246118.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NMA510612_RS05590 (NMA510612_1227) pilV 1062175..1062786 (+) 612 WP_002249636.1 type IV pilus modification protein PilV Machinery gene
  NMA510612_RS05595 (NMA510612_1228) pilJ 1062783..1063772 (+) 990 WP_002246120.1 PilW family protein Machinery gene
  NMA510612_RS05600 (NMA510612_1229) pilK 1063751..1064347 (+) 597 WP_002246121.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NMA510612_RS05605 (NMA510612_1230) pilX 1064352..1064825 (+) 474 WP_002246122.1 PilX family type IV pilin Machinery gene
  NMA510612_RS05610 (NMA510612_1231) - 1066482..1066910 (-) 429 Protein_1062 AzlC family ABC transporter permease -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25166.81 Da        Isoelectric Point: 10.0276

>NTDB_id=120313 NMA510612_RS05585 WP_002246118.1 1061474..1062151(+) (pilH) [Neisseria meningitidis strain 510612]
MCTRKQQGFTLTELLIVMAIAAIMAMIALPNMSQWIASRRIASHAERVANLLRFSRGEAVRLNLPVYICPVQVKKDGAPN
NKCDSGKKGQGMLAFGDKNGNKIYDNDTADVLLRSVVLNDDINNKRINYAFNHIAFGQTQPTADRVVWTFNQNGTFGYST
NQDLTNTSKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCPRGDRRTRRTMCQYK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=120313 NMA510612_RS05585 WP_002246118.1 1061474..1062151(+) (pilH) [Neisseria meningitidis strain 510612]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCGGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGCCCAAC
AATAAATGTGACTCCGGCAAGAAGGGGCAGGGAATGTTGGCTTTTGGCGATAAGAATGGCAATAAGATATATGACAATGA
TACGGCGGATGTTCTTCTCCGCAGTGTGGTATTGAATGATGATATCAATAATAAGCGGATTAATTATGCCTTCAACCATA
TCGCTTTCGGTCAGACTCAGCCGACCGCTGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATTCTACC
AATCAGGATCTCACGAATACTTCCAAATTTGTTTACTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGCCCTAGGGGTG
ATCGGCGTACTCGGCGTACTATGTGCCAGTATAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

86.574

96

0.831

Multiple sequence alignment