Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   NMA510612_RS05595 Genome accession   NZ_CP007524
Coordinates   1062783..1063772 (+) Length   329 a.a.
NCBI ID   WP_002246120.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 510612     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1057783..1068772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMA510612_RS05570 (NMA510612_1223) - 1057953..1058462 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  NMA510612_RS05575 (NMA510612_1224) - 1059009..1059596 (-) 588 WP_002246116.1 superoxide dismutase -
  NMA510612_RS05580 (NMA510612_1225) dnaB 1059759..1061165 (+) 1407 WP_002246117.1 replicative DNA helicase -
  NMA510612_RS05585 (NMA510612_1226) pilH 1061474..1062151 (+) 678 WP_002246118.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NMA510612_RS05590 (NMA510612_1227) pilV 1062175..1062786 (+) 612 WP_002249636.1 type IV pilus modification protein PilV Machinery gene
  NMA510612_RS05595 (NMA510612_1228) pilJ 1062783..1063772 (+) 990 WP_002246120.1 PilW family protein Machinery gene
  NMA510612_RS05600 (NMA510612_1229) pilK 1063751..1064347 (+) 597 WP_002246121.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NMA510612_RS05605 (NMA510612_1230) pilX 1064352..1064825 (+) 474 WP_002246122.1 PilX family type IV pilin Machinery gene
  NMA510612_RS05610 (NMA510612_1231) - 1066482..1066910 (-) 429 Protein_1062 AzlC family ABC transporter permease -
  NMA510612_RS05615 (NMA510612_1232) dut 1067058..1067510 (+) 453 WP_002245956.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 36129.09 Da        Isoelectric Point: 9.1663

>NTDB_id=120315 NMA510612_RS05595 WP_002246120.1 1062783..1063772(+) (pilJ) [Neisseria meningitidis strain 510612]
MRRKMLNVPKGSYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHIGSDVVSNVVQKNPLFSLKKRNSTNKLIPITESSNIGYPGFTQRLNALIFQYGIDDVNASADTTVVSSCAKIA
KPGKKISTLQEAKSALQITNDDKQNGNITRQRHVVNAYAVGRIAGEEGLFRFQLNDDGQWGNPQLLVKKINKMDIRYIYL
LVENPGIPPTNSPRYIYGCPEDDDAGKEETFKYTDKFDSSTNAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRG
GNVCANRTL

Nucleotide


Download         Length: 990 bp        

>NTDB_id=120315 NMA510612_RS05595 WP_002246120.1 1062783..1063772(+) (pilJ) [Neisseria meningitidis strain 510612]
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAGTTATGATGGTATGAAGGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACGTCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCTATTCAACAGGATTTGCGGAATGCGGCAACATTAATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATATCGGAAGTGATGTTGTTTCCAATGTGGTGCAAAAAAACCCTCTTTTTTCCTTAAAAAA
AAGGAACAGTACAAATAAACTTATCCCCATAACGGAATCTTCAAATATCGGATATCCGGGTTTTACCCAGCGCCTTAACG
CATTGATTTTCCAATACGGAATCGATGATGTTAATGCAAGCGCCGATACTACCGTCGTCAGCAGCTGTGCCAAAATAGCA
AAACCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGCATTACAGATTACTAATGATGATAAACAAAATGGAAA
TATCACCCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGGTGAGGAAGGTTTGTTCCGCTTCCAAT
TGAATGATGATGGGCAGTGGGGCAATCCTCAGTTGTTGGTTAAAAAGATTAATAAAATGGATATACGGTATATCTATCTT
CTCGTGGAAAATCCTGGTATACCGCCTACCAATTCTCCCCGGTATATTTACGGTTGCCCTGAAGATGACGATGCCGGCAA
AGAGGAAACATTCAAATATACGGATAAATTCGACAGCTCCACAAATGCTGTTACGCCCGCCGGGGTGGAGGTTTTATTGA
GTAGCGGTACTGATACCAAGATTGCCGCTTCTTCAGACAATCATATTTATGCTTACCGTATCGATGCGACAATACGCGGG
GGAAATGTATGCGCAAACAGAACACTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

77.108

100

0.778

Multiple sequence alignment