Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   NMA510612_RS05600 Genome accession   NZ_CP007524
Coordinates   1063751..1064347 (+) Length   198 a.a.
NCBI ID   WP_002246121.1    Uniprot ID   X5EPX0
Organism   Neisseria meningitidis strain 510612     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1058751..1069347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMA510612_RS05575 (NMA510612_1224) - 1059009..1059596 (-) 588 WP_002246116.1 superoxide dismutase -
  NMA510612_RS05580 (NMA510612_1225) dnaB 1059759..1061165 (+) 1407 WP_002246117.1 replicative DNA helicase -
  NMA510612_RS05585 (NMA510612_1226) pilH 1061474..1062151 (+) 678 WP_002246118.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NMA510612_RS05590 (NMA510612_1227) pilV 1062175..1062786 (+) 612 WP_002249636.1 type IV pilus modification protein PilV Machinery gene
  NMA510612_RS05595 (NMA510612_1228) pilJ 1062783..1063772 (+) 990 WP_002246120.1 PilW family protein Machinery gene
  NMA510612_RS05600 (NMA510612_1229) pilK 1063751..1064347 (+) 597 WP_002246121.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NMA510612_RS05605 (NMA510612_1230) pilX 1064352..1064825 (+) 474 WP_002246122.1 PilX family type IV pilin Machinery gene
  NMA510612_RS05610 (NMA510612_1231) - 1066482..1066910 (-) 429 Protein_1062 AzlC family ABC transporter permease -
  NMA510612_RS05615 (NMA510612_1232) dut 1067058..1067510 (+) 453 WP_002245956.1 dUTP diphosphatase -
  NMA510612_RS05620 (NMA510612_1233) dapC 1067587..1068774 (+) 1188 WP_002245957.1 succinyldiaminopimelate transaminase -
  NMA510612_RS15560 - 1068862..1068987 (+) 126 Protein_1065 IS5/IS1182 family transposase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21696.63 Da        Isoelectric Point: 7.5813

>NTDB_id=120316 NMA510612_RS05600 WP_002246121.1 1063751..1064347(+) (pilK) [Neisseria meningitidis strain 510612]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCAKGLCTAVNVRTNNTGNEEAFDNIVVQGNPTVEAVKRSCLAKSTGLCIDNKGMEYKKGTRSVSKPPRYII
EYLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=120316 NMA510612_RS05600 WP_002246121.1 1063751..1064347(+) (pilK) [Neisseria meningitidis strain 510612]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCGCTGTTTATCGTACTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGCAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATACTGGTAA
TGAAGAGGCTTTTGACAATATCGTGGTGCAAGGCAATCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCTTGCAAAATCTA
CAGGCCTGTGCATTGACAATAAAGGGATGGAATATAAGAAAGGCACGAGAAGCGTCAGCAAACCGCCGCGTTATATTATC
GAATATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGT
CGTCCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-193)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X5EPX0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

87.624

100

0.894

Multiple sequence alignment