Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   UIB01_RS01390 Genome accession   NZ_CP007509
Coordinates   293605..294639 (+) Length   344 a.a.
NCBI ID   WP_038656160.1    Uniprot ID   -
Organism   Stutzerimonas decontaminans strain 19SMN4     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 288605..299639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UIB01_RS01370 (UIB01_01395) - 289175..291142 (-) 1968 WP_038656152.1 dynamin-like GTPase family protein -
  UIB01_RS01375 (UIB01_01400) - 291414..292004 (-) 591 WP_038656154.1 YggT family protein -
  UIB01_RS01380 (UIB01_01405) proC 292014..292838 (-) 825 WP_038656156.1 pyrroline-5-carboxylate reductase -
  UIB01_RS01385 (UIB01_01410) - 292849..293538 (-) 690 WP_038656158.1 YggS family pyridoxal phosphate-dependent enzyme -
  UIB01_RS01390 (UIB01_01415) pilT 293605..294639 (+) 1035 WP_038656160.1 type IV pilus twitching motility protein PilT Machinery gene
  UIB01_RS01395 (UIB01_01420) pilU 294699..295844 (+) 1146 WP_038656162.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  UIB01_RS01400 (UIB01_01425) - 295841..296677 (-) 837 WP_038656164.1 TIGR03915 family putative DNA repair protein -
  UIB01_RS01405 (UIB01_01430) - 296677..297888 (-) 1212 WP_038665304.1 putative DNA modification/repair radical SAM protein -
  UIB01_RS01410 (UIB01_01435) - 298022..298417 (+) 396 WP_038656166.1 TM2 domain-containing protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37919.65 Da        Isoelectric Point: 6.8360

>NTDB_id=120126 UIB01_RS01390 WP_038656160.1 293605..294639(+) (pilT) [Stutzerimonas decontaminans strain 19SMN4]
MDITELLAFSAKQGASDLHLSAGLPPMIRVDGDVRRINLPAMDHKQVHALIYDIMNDKQRKDFEEFLETDFSFEVPGVAR
FRVNAFNQNRGSGAVFRTIPSKVLTMEDLGMGEVFRKITDVPRGLVLVTGPTGSGKSTTLAAMLDYLNSTKYHHILTIED
PIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
VDVFPAEEKSMVRSMLSESLQAVISQTLLKKVGGGRVAAHEIMIGTPAIRNLIREDKVAQMYSSIQTGGSLGMQTLDSCL
KGLLAKGLISRDSAKEKAKQPENF

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=120126 UIB01_RS01390 WP_038656160.1 293605..294639(+) (pilT) [Stutzerimonas decontaminans strain 19SMN4]
ATGGATATCACAGAACTGCTGGCCTTCAGCGCCAAGCAGGGTGCGTCGGATTTGCACCTTTCCGCCGGCCTGCCGCCGAT
GATTCGCGTCGATGGCGACGTGCGGCGCATCAACCTGCCGGCCATGGACCACAAGCAGGTGCATGCGCTGATCTACGACA
TCATGAACGACAAGCAGCGCAAGGATTTCGAGGAATTCCTGGAAACCGACTTCTCGTTCGAAGTGCCCGGCGTGGCGCGC
TTCCGCGTCAACGCGTTCAACCAGAATCGCGGTTCCGGTGCGGTGTTTCGGACCATTCCTTCCAAGGTGCTGACCATGGA
AGACCTGGGGATGGGCGAGGTGTTTCGTAAGATCACCGACGTGCCGCGTGGGCTGGTGCTGGTCACCGGGCCGACCGGCT
CGGGCAAGTCGACCACCCTGGCGGCGATGCTCGATTACCTGAACAGCACCAAATACCACCATATCCTCACCATCGAGGAC
CCCATCGAATTCGTCCACGAATCGAAGAAGTGCCTGGTCAACCAGCGCGAGGTCCATCGTGACACCCTGGGTTTCTCCGA
AGCCCTGCGTTCGGCATTGCGTGAAGACCCGGACATCATTCTGGTCGGCGAAATGCGCGACCTGGAAACCATTCGCCTGG
CGCTGACTGCCGCGGAAACCGGTCACCTGGTGTTCGGCACCCTGCACACCACCTCCGCCGCCAAGACCATCGACCGCGTG
GTCGACGTGTTCCCGGCCGAAGAGAAGTCCATGGTCCGCTCGATGCTTTCCGAATCGCTGCAGGCGGTGATTTCGCAGAC
CCTGCTAAAGAAAGTCGGCGGCGGCCGTGTGGCGGCCCACGAGATCATGATCGGCACCCCTGCCATTCGGAACCTGATCC
GCGAGGACAAGGTGGCGCAGATGTATTCCTCGATTCAGACCGGTGGCTCGCTGGGCATGCAGACACTGGACTCGTGCCTC
AAGGGGCTGCTGGCCAAAGGGCTGATCTCGCGAGACAGCGCCAAGGAAAAGGCCAAGCAGCCAGAGAACTTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Pseudomonas stutzeri DSM 10701

99.128

100

0.991
  pilT Pseudomonas aeruginosa PAK

93.895

100

0.939
  pilT Acinetobacter baumannii D1279779

84.012

100

0.84
  pilT Acinetobacter baumannii strain A118

84.012

100

0.84
  pilT Acinetobacter nosocomialis M2

83.721

100

0.837
  pilT Acinetobacter baylyi ADP1

83.14

100

0.831
  pilT Legionella pneumophila strain Lp02

74.556

98.256

0.733
  pilT Legionella pneumophila strain ERS1305867

74.556

98.256

0.733
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

69.139

97.965

0.677
  pilT Vibrio cholerae strain A1552

69.139

97.965

0.677
  pilT Neisseria meningitidis 8013

66.957

100

0.672
  pilT Neisseria gonorrhoeae MS11

66.667

100

0.669
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.754

100

0.529
  pilU Vibrio cholerae strain A1552

41.003

98.547

0.404
  pilU Pseudomonas stutzeri DSM 10701

40.896

97.384

0.398
  pilU Acinetobacter baylyi ADP1

39.306

100

0.395

Multiple sequence alignment