Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   GBS85147_RS03360 Genome accession   NZ_CP010319
Coordinates   628521..629306 (+) Length   261 a.a.
NCBI ID   WP_000825429.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain GBS85147     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 623521..634306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBS85147_RS10680 - 624639..625349 (+) 711 Protein_602 ABC transporter permease -
  GBS85147_RS10685 - 625533..625991 (+) 459 WP_323128298.1 FtsX-like permease family protein -
  GBS85147_RS03350 (GBS85147_0680) - 626088..626759 (+) 672 WP_000891266.1 ATP-binding cassette domain-containing protein -
  GBS85147_RS03355 (GBS85147_0681) - 626816..628261 (-) 1446 WP_000750928.1 FAD/NAD(P)-binding protein -
  GBS85147_RS03360 (GBS85147_0682) endA 628521..629306 (+) 786 WP_000825429.1 DNA/RNA non-specific endonuclease Machinery gene
  GBS85147_RS03365 (GBS85147_0683) - 629384..630022 (-) 639 WP_000478529.1 VTT domain-containing protein -
  GBS85147_RS03370 (GBS85147_0684) - 630239..630895 (+) 657 WP_000121097.1 ATP-binding cassette domain-containing protein -
  GBS85147_RS03375 (GBS85147_0685) - 630892..631665 (+) 774 WP_000011926.1 ABC transporter permease -
  GBS85147_RS03380 (GBS85147_0686) - 631829..632647 (+) 819 WP_000601009.1 hypothetical protein -
  GBS85147_RS03385 (GBS85147_0687) - 632684..633568 (-) 885 WP_000354839.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 29433.91 Da        Isoelectric Point: 9.3101

>NTDB_id=120064 GBS85147_RS03360 WP_000825429.1 628521..629306(+) (endA) [Streptococcus agalactiae strain GBS85147]
MKRLHKLFITVIATLGMLGVMTFGLPTQPQNVTPIVHADVNSSVDTIQEFQNNLKNAIGNLPFQYVNGIYELNNNQTNLN
ADVNVKAYVQNTIDNQQRPSTANAMLDRTIRQYQNRRDTTLPDANWKPLGWHQVATNDHYGHAVDKGHLIAYALAGNFKG
WNASVSNPQNVVTQTAHSNQSNQKINRGQNYYESLVRKAVDQNKRVRYRVTPLYRNDTDLVPFAMHLEAKSQDGTLEFNV
AIPNTQASYTMDYATGEITLN

Nucleotide


Download         Length: 786 bp        

>NTDB_id=120064 GBS85147_RS03360 WP_000825429.1 628521..629306(+) (endA) [Streptococcus agalactiae strain GBS85147]
ATGAAAAGATTACATAAACTGTTTATAACCGTAATTGCTACATTAGGTATGTTGGGGGTAATGACCTTTGGTCTTCCAAC
GCAGCCGCAAAACGTAACACCGATAGTACATGCTGATGTCAATTCATCTGTTGATACGATCCAGGAATTTCAAAATAATT
TAAAAAATGCTATTGGTAACCTACCATTTCAATATGTTAATGGTATTTATGAATTAAATAATAATCAAACAAATTTAAAT
GCTGATGTCAATGTTAAAGCGTATGTTCAAAATACAATTGACAATCAACAGAGACCATCAACTGCTAATGCAATGCTTGA
TAGAACCATTCGTCAATATCAAAATCGCAGAGATACCACTCTTCCCGATGCAAATTGGAAACCATTAGGTTGGCATCAAG
TAGCTACTAATGACCATTATGGGCATGCAGTCGACAAGGGGCATTTAATTGCCTATGCTTTAGCTGGAAATTTCAAAGGC
TGGAATGCTTCCGTGTCAAATCCTCAAAATGTTGTCACACAAACAGCTCATTCCAACCAATCAAATCAAAAAATCAATCG
TGGACAAAATTATTATGAAAGCTTAGTTCGTAAGGCGGTTGACCAAAACAAACGTGTTCGTTACCGTGTAACTCCATTGT
ACCGTAATGATACTGATTTAGTTCCATTTGCAATGCACCTAGAAGCTAAATCACAAGATGGCACATTAGAATTTAATGTT
GCTATTCCAAACACACAAGCATCATATACTATGGATTATGCAACAGGAGAAATAACACTAAATTAA

Domains

Predicted by InterProScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(77-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

51.515

75.862

0.391
  endA Streptococcus pneumoniae D39

51.515

75.862

0.391
  endA Streptococcus pneumoniae R6

51.515

75.862

0.391
  endA Streptococcus pneumoniae TIGR4

51.515

75.862

0.391

Multiple sequence alignment