Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsE   Type   Machinery gene
Locus tag   YSS_RS07680 Genome accession   NZ_CP007181
Coordinates   1489370..1490932 (-) Length   520 a.a.
NCBI ID   WP_025399237.1    Uniprot ID   -
Organism   Campylobacter coli RM4661     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1484370..1495932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YSS_RS07655 (YSS_07825) - 1484393..1484827 (+) 435 WP_002845628.1 flagellar protein FlgN -
  YSS_RS07660 (YSS_07830) flgK 1484837..1486663 (+) 1827 WP_025399235.1 flagellar hook-associated protein FlgK -
  YSS_RS07665 (YSS_07835) - 1486680..1487444 (+) 765 WP_002781156.1 TIGR02757 family protein -
  YSS_RS07670 (YSS_07840) - 1487447..1488211 (+) 765 WP_002781157.1 TSUP family transporter -
  YSS_RS07675 (YSS_07845) ctsF 1488208..1489383 (-) 1176 WP_025399236.1 type II secretion system F family protein Machinery gene
  YSS_RS07680 (YSS_07850) ctsE 1489370..1490932 (-) 1563 WP_025399237.1 GspE/PulE family protein Machinery gene
  YSS_RS07685 (YSS_07855) - 1490925..1491521 (-) 597 WP_002779313.1 CDC27 family protein -
  YSS_RS07690 (YSS_07860) ctsP 1491518..1492114 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  YSS_RS07695 (YSS_07865) ctsD 1492107..1493525 (-) 1419 WP_025399238.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  YSS_RS07700 (YSS_07870) ctsR 1493503..1493814 (-) 312 WP_002795361.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 520 a.a.        Molecular weight: 59828.44 Da        Isoelectric Point: 5.6204

>NTDB_id=117191 YSS_RS07680 WP_025399237.1 1489370..1490932(-) (ctsE) [Campylobacter coli RM4661]
MIERFLFEDYINGKITLEQIDREHKIDSEIFLKALASDKNISYSTLEELDLSLGEKFPCSFLFKFKILPILSKENTLHIA
SSKPCSLELLDEIRIFYEVKNIEVLIASEFKIMKFLYKLQVREKLKNLSTNLRLEWKENRSQDEQSCISQIFDFILDEIL
EFNPSDIHIEARENDTLIRFRVDGILREFACLEKDIYEALVFHIKFLSQLNVAESRKAQDGNFELKIKENRYDFRISSLP
LQNGESIVIRILKHNEEILDLENLNLGEKNLTILKKALYNPYGMILLTGPTGSGKSTSLYACLNELKSIEKKIISVEDPI
EYKMPLIQQILLNPKAGLEFNNALRAILRQDPDIIMIGEIRDEESLDIAIKASLTGHLLLSTLHTNNAISTIDRLIDMSA
KPYLIASALRLIIAQRLVRKLCPKCKQKSTKVYEIKGDFFEAKGCEYCHHSGYQGRELISECLYIDEEIAQVIREGGYKN
KILELAKAKGFQSMFEQGLQKAKEGITSIDELLRVLNEAL

Nucleotide


Download         Length: 1563 bp        

>NTDB_id=117191 YSS_RS07680 WP_025399237.1 1489370..1490932(-) (ctsE) [Campylobacter coli RM4661]
ATGATTGAGCGATTTTTATTTGAAGATTATATTAATGGTAAAATCACCCTTGAGCAAATTGATCGTGAGCATAAAATCGA
TAGTGAAATTTTTCTAAAAGCTTTGGCTAGTGATAAAAATATTTCTTATTCTACTTTAGAGGAACTTGATCTTAGTTTGG
GTGAAAAATTTCCATGTAGTTTTCTTTTTAAATTTAAAATCTTGCCCATTTTAAGTAAAGAAAATACACTTCATATAGCA
AGCTCCAAACCTTGTTCTTTAGAGCTTTTAGATGAGATTAGAATTTTTTATGAAGTTAAGAATATAGAAGTTTTGATCGC
AAGCGAATTTAAGATTATGAAATTTTTATATAAACTTCAAGTTAGAGAAAAACTTAAAAATTTAAGCACCAATCTTAGAT
TAGAATGGAAAGAAAATAGAAGTCAAGATGAGCAAAGTTGTATCAGTCAAATTTTTGATTTTATACTCGATGAAATTCTT
GAATTTAATCCTAGCGATATACATATAGAAGCAAGAGAAAATGATACTTTGATAAGATTTAGAGTAGATGGAATTTTACG
CGAATTTGCTTGTCTTGAAAAAGATATTTATGAGGCTTTGGTTTTTCATATTAAATTTTTATCGCAGCTTAATGTTGCAG
AATCAAGAAAGGCTCAAGATGGAAATTTTGAGCTTAAAATCAAAGAAAATAGATATGATTTTAGGATTTCATCTTTGCCT
TTGCAAAATGGCGAAAGCATTGTGATAAGAATTTTAAAACACAACGAAGAAATTTTGGATTTAGAAAATTTAAATTTGGG
CGAAAAAAATCTTACAATTCTAAAAAAAGCCCTATACAACCCTTATGGAATGATTTTACTAACAGGTCCTACAGGAAGTG
GAAAAAGTACAAGTTTATATGCTTGTTTAAATGAGCTAAAAAGCATAGAAAAGAAAATAATTTCTGTGGAAGATCCTATA
GAATATAAAATGCCTTTAATTCAGCAAATTTTGCTAAATCCAAAAGCAGGGCTTGAATTTAATAATGCCCTAAGAGCTAT
TTTAAGACAAGATCCTGATATTATCATGATAGGAGAAATCAGAGATGAGGAGAGTCTTGATATAGCGATTAAGGCTTCTT
TAACAGGACACTTGCTTTTAAGTACCTTGCATACAAATAATGCCATTTCTACCATAGATAGATTAATTGACATGAGTGCA
AAGCCTTATTTGATCGCTTCTGCTTTAAGGCTTATCATTGCCCAGCGTTTAGTGCGCAAGCTTTGTCCTAAATGCAAGCA
AAAAAGCACTAAGGTTTATGAAATAAAAGGTGATTTTTTTGAAGCTAAAGGCTGCGAGTATTGTCATCATAGTGGATATC
AAGGTAGAGAACTCATCAGTGAGTGTTTATATATCGATGAGGAAATAGCTCAAGTTATTAGAGAGGGTGGTTATAAAAAT
AAAATTCTAGAGCTTGCTAAAGCAAAGGGTTTTCAAAGTATGTTTGAGCAAGGTTTGCAAAAAGCAAAAGAGGGTATAAC
TAGCATAGATGAGCTTTTAAGGGTACTTAATGAAGCTTTATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(46-123)

Type II/IV secretion system protein (T2SSE)

(155-420)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsE Campylobacter jejuni subsp. jejuni 81-176

67.188

98.462

0.662
  pilB Acinetobacter baylyi ADP1

35.179

100

0.379
  pilB Legionella pneumophila strain ERS1305867

40.412

93.269

0.377

Multiple sequence alignment