Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   YSS_RS07690 Genome accession   NZ_CP007181
Coordinates   1491518..1492114 (-) Length   198 a.a.
NCBI ID   WP_002779314.1    Uniprot ID   A0A0Q2JMT7
Organism   Campylobacter coli RM4661     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1486518..1497114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YSS_RS07665 (YSS_07835) - 1486680..1487444 (+) 765 WP_002781156.1 TIGR02757 family protein -
  YSS_RS07670 (YSS_07840) - 1487447..1488211 (+) 765 WP_002781157.1 TSUP family transporter -
  YSS_RS07675 (YSS_07845) ctsF 1488208..1489383 (-) 1176 WP_025399236.1 type II secretion system F family protein Machinery gene
  YSS_RS07680 (YSS_07850) ctsE 1489370..1490932 (-) 1563 WP_025399237.1 GspE/PulE family protein Machinery gene
  YSS_RS07685 (YSS_07855) - 1490925..1491521 (-) 597 WP_002779313.1 CDC27 family protein -
  YSS_RS07690 (YSS_07860) ctsP 1491518..1492114 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  YSS_RS07695 (YSS_07865) ctsD 1492107..1493525 (-) 1419 WP_025399238.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  YSS_RS07700 (YSS_07870) ctsR 1493503..1493814 (-) 312 WP_002795361.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23633.42 Da        Isoelectric Point: 9.1569

>NTDB_id=117192 YSS_RS07690 WP_002779314.1 1491518..1492114(-) (ctsP) [Campylobacter coli RM4661]
MNNIIAFRQECFDQINALLKNKALILLWGKSGSGKSVLLQRLALYHNEDFTNEIFTDEKDFHHFIQDKKRKIIILDEVGM
YSPNVLELIRIYSDEMSFVLSSHKKINLFEEEYFKSRFSAIFWLQKPDINELSNYIKMKFNQDFPQKSLKFLMKIYQGNL
RYLDKILQSFCELNTYLNNKKSQDYILRLSALEQGFLK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=117192 YSS_RS07690 WP_002779314.1 1491518..1492114(-) (ctsP) [Campylobacter coli RM4661]
ATGAATAATATAATTGCTTTTAGACAAGAATGTTTTGATCAAATCAATGCCTTATTAAAAAATAAAGCTTTGATTTTGCT
TTGGGGTAAAAGCGGTAGTGGGAAAAGTGTTTTATTGCAAAGACTTGCGCTATATCATAATGAAGATTTTACCAATGAAA
TTTTTACAGATGAAAAAGATTTTCATCATTTTATACAAGATAAAAAACGAAAAATTATCATACTAGATGAAGTGGGGATG
TATAGTCCTAATGTATTAGAACTAATTCGGATTTATAGCGATGAAATGAGTTTTGTACTTAGCTCACATAAAAAAATCAA
TCTTTTTGAAGAGGAGTATTTTAAAAGTCGTTTTAGTGCTATTTTTTGGCTTCAAAAACCTGATATAAATGAATTAAGCA
ATTATATCAAAATGAAATTTAATCAAGACTTTCCCCAAAAATCTTTAAAATTTCTTATGAAAATTTATCAAGGAAATTTA
AGGTATTTAGACAAGATACTTCAAAGTTTTTGCGAATTAAACACCTATTTAAACAATAAAAAAAGTCAAGATTATATTTT
AAGACTAAGCGCATTAGAACAGGGATTTTTAAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2JMT7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

57.921

100

0.591

Multiple sequence alignment