Detailed information NTG0117193

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: YSS_RS07695
• Genome accession: NZ_CP007181
• Coordinates: 1492107..1493525 (-)
• Length: 472 a.a.
• NCBI ID: WP_025399238.1
• Uniprot ID: -
• Organism: Campylobacter coli RM4661
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1487107..1498525

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
YSS_RS07670 (YSS_07840)	-	1487447..1488211 (+)	765	WP_002781157.1	TSUP family transporter	-
YSS_RS07675 (YSS_07845)	ctsF	1488208..1489383 (-)	1176	WP_025399236.1	type II secretion system F family protein	Machinery gene
YSS_RS07680 (YSS_07850)	ctsE	1489370..1490932 (-)	1563	WP_025399237.1	GspE/PulE family protein	Machinery gene
YSS_RS07685 (YSS_07855)	-	1490925..1491521 (-)	597	WP_002779313.1	CDC27 family protein	-
YSS_RS07690 (YSS_07860)	ctsP	1491518..1492114 (-)	597	WP_002779314.1	ATP-binding protein	Machinery gene
YSS_RS07695 (YSS_07865)	ctsD	1492107..1493525 (-)	1419	WP_025399238.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
YSS_RS07700 (YSS_07870)	ctsR	1493503..1493814 (-)	312	WP_002795361.1	hypothetical protein	Machinery gene
YSS_RS07705 (YSS_07875)	nifJ	1493838..1497398 (-)	3561	WP_025399239.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
YSS_RS07710 (YSS_07880)	-	1497502..1498140 (-)	639	WP_025399240.1	HAD family hydrolase	-

Sequence

Protein

• Length: 472 a.a.
• Molecular weight: 53459.99 Da
• Isoelectric Point: 6.3766

>NTDB_id=117193 YSS_RS07695 WP_025399238.1 1492107..1493525(-) (ctsD) [Campylobacter coli RM4661]
MIRLIFIKILFFTNLIYAMECQKRLFDININEDLSIEESLKELASYCSFSVVIKDTIAKEKLKAIQSSINIHQMSLDEIF
KLFIEEQDLAYKFDGKILKISALQTRIFKINYITSVREGQSITKASVDSKPRQSEYYSAFEDNEDNMIKSMEKFDFWQNI
EKEIMILLSSSHENYDIKAPIVNPNAGLVIVTGTHSQLQRVKAYLQKLESRLKKQVIIDVSILAVNLNKNHSSGINWQNF
NIGLNSQTSDNTNSFMQIQNGQGFVKNLGLRANLNFDSIVNFLSQSGKTSVLSNPKLMALNNQQAIISIGDTVNYQVKES
SKGTENGTTVSESYSNYSIFIGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVEN
NQTLILGGLISHNRSQNDNSVNFLSKIPILGSLFRSEDENSNITEIVFIITPSIVDNANIPSLRELGFKYNE

Nucleotide

• Length: 1419 bp

>NTDB_id=117193 YSS_RS07695 WP_025399238.1 1492107..1493525(-) (ctsD) [Campylobacter coli RM4661]
ATGATAAGATTAATATTTATTAAAATTCTATTTTTTACCAATCTTATTTATGCCATGGAATGCCAAAAACGCTTATTTGA
TATAAATATCAATGAAGATCTAAGCATAGAAGAAAGTCTAAAAGAACTTGCTAGTTATTGCTCTTTTAGCGTGGTAATTA
AAGATACAATTGCTAAGGAAAAACTAAAAGCCATTCAAAGCAGTATCAATATCCACCAAATGAGTTTAGATGAAATTTTT
AAACTTTTTATAGAAGAACAGGACCTAGCTTATAAATTTGATGGCAAGATTTTAAAAATTTCTGCTTTACAAACTAGAAT
TTTTAAAATCAACTATATTACTTCAGTTAGAGAAGGACAAAGCATAACCAAGGCTTCGGTGGATTCTAAGCCAAGGCAAA
GTGAGTATTATAGCGCTTTTGAAGATAATGAAGATAATATGATTAAAAGTATGGAAAAATTTGACTTTTGGCAAAATATA
GAAAAAGAGATTATGATTTTGCTTAGCTCCTCACATGAAAACTATGATATAAAAGCACCTATAGTCAATCCAAATGCTGG
GCTTGTTATCGTTACTGGAACGCATTCTCAGCTTCAACGCGTAAAAGCTTATTTACAAAAGCTTGAAAGTCGTCTTAAAA
AACAAGTTATTATAGATGTGAGTATACTTGCTGTAAATCTTAATAAAAATCATTCTAGTGGGATCAATTGGCAAAATTTC
AATATAGGATTAAATTCTCAAACGAGCGATAATACAAATTCTTTTATGCAAATACAAAATGGTCAAGGTTTTGTTAAAAA
TTTGGGTTTAAGAGCGAATTTGAATTTTGATTCCATTGTCAATTTTTTATCTCAAAGTGGAAAAACCAGTGTTTTATCTA
ATCCTAAATTAATGGCTTTAAACAATCAACAAGCCATTATTTCCATAGGCGATACTGTGAATTATCAAGTAAAAGAAAGC
TCTAAAGGTACTGAAAATGGCACAACTGTAAGTGAGAGTTATAGTAATTATTCTATTTTCATAGGAATTTTGCTTAATAT
TTTGCCCGAAATTTCTGATGATGGAAAAATCATGCTTAGGATCAATCCAAGTCTAAGCGACTTTAAATACCCAGAGGACA
ATAAAAGACAAAAAGAACCCCGCACTATCGCGCCTGATACAATTCAAAAAAAGCTTTCAAGCGTGGTGCAAGTAGAAAAT
AATCAAACTTTAATTTTGGGCGGACTTATCTCTCATAATCGCTCACAAAATGATAATTCTGTTAATTTTTTATCTAAAAT
TCCCATTTTGGGTTCTTTATTTAGAAGTGAAGATGAAAATTCCAATATCACAGAAATTGTTTTTATCATCACCCCAAGCA
TAGTAGATAATGCAAATATACCTAGTCTTAGGGAGTTAGGATTTAAATACAATGAATAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (283-456)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	80.932	100	0.809