Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   YSS_RS07700 Genome accession   NZ_CP007181
Coordinates   1493503..1493814 (-) Length   103 a.a.
NCBI ID   WP_002795361.1    Uniprot ID   A0A5T1JQB7
Organism   Campylobacter coli RM4661     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1488503..1498814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YSS_RS07680 (YSS_07850) ctsE 1489370..1490932 (-) 1563 WP_025399237.1 GspE/PulE family protein Machinery gene
  YSS_RS07685 (YSS_07855) - 1490925..1491521 (-) 597 WP_002779313.1 CDC27 family protein -
  YSS_RS07690 (YSS_07860) ctsP 1491518..1492114 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  YSS_RS07695 (YSS_07865) ctsD 1492107..1493525 (-) 1419 WP_025399238.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  YSS_RS07700 (YSS_07870) ctsR 1493503..1493814 (-) 312 WP_002795361.1 hypothetical protein Machinery gene
  YSS_RS07705 (YSS_07875) nifJ 1493838..1497398 (-) 3561 WP_025399239.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  YSS_RS07710 (YSS_07880) - 1497502..1498140 (-) 639 WP_025399240.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12341.36 Da        Isoelectric Point: 5.2164

>NTDB_id=117194 YSS_RS07700 WP_002795361.1 1493503..1493814(-) (ctsR) [Campylobacter coli RM4661]
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIEEAVITDITTKE
IILRYDTLDFKIAFKNNDKINIY

Nucleotide


Download         Length: 312 bp        

>NTDB_id=117194 YSS_RS07700 WP_002795361.1 1493503..1493814(-) (ctsR) [Campylobacter coli RM4661]
TTGTGCTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGAGGAGGCCGTGATTACTGATATTACTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T1JQB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

55.882

99.029

0.553

Multiple sequence alignment