Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   DYB47_RS09540 Genome accession   NZ_UHFV01000002
Coordinates   1915607..1916812 (+) Length   401 a.a.
NCBI ID   WP_003081517.1    Uniprot ID   G5JXJ8
Organism   Streptococcus macacae NCTC 11558     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1910607..1921812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYB47_RS09505 (NCTC11558_01928) - 1911355..1912980 (+) 1626 WP_003081086.1 ABC-F family ATP-binding cassette domain-containing protein -
  DYB47_RS09510 (NCTC11558_01929) tnpA 1913222..1913617 (-) 396 WP_003080128.1 IS200/IS605 family transposase -
  DYB47_RS09530 (NCTC11558_01933) - 1914223..1914894 (-) 672 WP_003082423.1 YoaK family protein -
  DYB47_RS09535 (NCTC11558_01934) rlmH 1914959..1915438 (-) 480 WP_003079652.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  DYB47_RS09540 (NCTC11558_01935) htrA 1915607..1916812 (+) 1206 WP_003081517.1 S1C family serine protease Regulator
  DYB47_RS09545 (NCTC11558_01936) spo0J 1917026..1917793 (+) 768 WP_003078711.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 401 a.a.        Molecular weight: 42908.51 Da        Isoelectric Point: 9.1194

>NTDB_id=1171344 DYB47_RS09540 WP_003081517.1 1915607..1916812(+) (htrA) [Streptococcus macacae NCTC 11558]
MNNMKSNPFLKWFLPFLAVFLSFILGISAILIFNWVSGNGGKTNQKTTVSSVVYDINTETTKAVKNVKNSVVSVINYQKI
DNRYYNYDNASEGKNKSEDGLGVYGEGSGVIYRKSGNDAYVVTNNHVIKDAKKLEIMLANGKKVVGKLVGSDTYSDLAVI
KISSKQVTTVAEFADSDKLKVGEPAIAIGSPLGSDYANSVTEGIVSSLSRTVTSQNEEGETISTNAIQTDAAINPGNSGG
ALVNIKGQVIGINSSKIASSTGSKNGVAVEGMGFAIPANDVRSIINQLEENGEVIRPALGISMANLSEASTSDRDTLKIP
ENVTSGIVVLSTESGMPADNKLKKYDVITEIDGKKVASISDLQSALYKHKKGDKVKITFYRGNDKKNIEIELTKTSKDLN
H

Nucleotide


Download         Length: 1206 bp        

>NTDB_id=1171344 DYB47_RS09540 WP_003081517.1 1915607..1916812(+) (htrA) [Streptococcus macacae NCTC 11558]
GTGAATAATATGAAATCAAATCCTTTTTTAAAATGGTTTTTGCCATTTTTAGCAGTATTCCTTAGTTTTATACTCGGAAT
TTCTGCAATACTTATTTTTAACTGGGTATCCGGTAATGGTGGAAAAACAAACCAAAAAACAACTGTCAGCAGTGTCGTTT
ATGATATTAATACTGAAACAACTAAAGCTGTCAAAAATGTTAAAAATTCTGTAGTCTCAGTTATTAATTATCAAAAAATA
GATAATCGCTACTATAATTACGATAATGCTTCTGAAGGAAAAAATAAATCAGAAGATGGGTTAGGTGTATACGGCGAAGG
GTCTGGCGTTATTTATAGAAAAAGTGGAAATGATGCTTACGTAGTCACCAATAATCATGTTATTAAAGATGCCAAAAAAT
TAGAAATTATGTTGGCTAATGGAAAAAAAGTTGTTGGTAAACTTGTGGGTTCAGATACATACTCAGATTTAGCTGTTATT
AAAATTTCTTCAAAACAAGTTACTACAGTAGCAGAATTTGCTGATTCTGATAAACTAAAAGTAGGAGAACCAGCCATTGC
AATTGGTAGTCCATTGGGTAGTGATTATGCTAATTCTGTTACAGAAGGTATTGTGTCCAGCCTCAGCCGTACCGTAACCT
CGCAAAATGAAGAAGGCGAAACTATTTCAACCAATGCTATCCAAACAGATGCTGCAATCAATCCTGGTAACTCAGGAGGT
GCTTTAGTCAATATCAAAGGACAAGTCATTGGAATTAATTCAAGTAAAATTGCATCAAGTACTGGCTCTAAAAATGGCGT
TGCTGTGGAAGGAATGGGATTTGCCATTCCCGCTAATGACGTTCGTTCCATTATCAATCAATTAGAAGAAAATGGTGAAG
TAATTCGCCCTGCCCTCGGTATTTCAATGGCTAATTTAAGTGAAGCTTCAACAAGTGATAGAGATACACTTAAAATCCCA
GAAAACGTTACAAGCGGTATTGTCGTTCTTTCGACAGAATCTGGCATGCCAGCCGATAACAAACTGAAGAAATATGATGT
CATTACGGAAATTGATGGTAAAAAAGTGGCTTCTATTAGTGACTTACAAAGTGCCCTTTACAAACATAAAAAAGGTGATA
AAGTGAAAATTACTTTCTATCGCGGTAATGATAAGAAAAACATTGAAATCGAGTTAACAAAAACAAGTAAAGATCTCAAT
CATTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB G5JXJ8

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

83.333

100

0.835

  htrA Streptococcus gordonii str. Challis substr. CH1

56.281

99.252

0.559

  htrA Streptococcus pneumoniae Rx1

53.234

100

0.534

  htrA Streptococcus pneumoniae TIGR4

53.234

100

0.534

  htrA Streptococcus pneumoniae D39

53.234

100

0.534

  htrA Streptococcus pneumoniae R6

53.234

100

0.534

  htrA Streptococcus mitis NCTC 12261

53.807

98.254

0.529


Multiple sequence alignment